Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3460

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11827 and 11828 are separated by 156 nucleotides11828 and 11829 are separated by 390 nucleotides mRNA_3459: 11827 - ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 147,794 to 151,467 11827 mRNA_3460: 11828 - HMMPfam-Fasciclin domain-PF02469,SUPERFAMILY--SSF82153, at 151,624 to 153,827 11828 mRNA_3461: 11829 - KOG1217 Fibrillins and related proteins containing Ca2+-binding EGF-like domains, at 154,218 to 156,143 11829

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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150,641 - 11827 mRNA_3459 0.77 +0.0
150,671 - 11827 mRNA_3459 0.78 -0.2
150,794 - 11827 mRNA_3459 0.82 +0.1
150,834 - 11827 mRNA_3459 0.83 -0.7
150,913 - 11827 mRNA_3459 0.85 +0.8
150,916 + 11827 mRNA_3459 0.85 +0.5
150,943 + 11827 mRNA_3459 0.86 +0.2
151,047 + 11827 mRNA_3459 0.89 +0.1
151,093 - 11827 mRNA_3459 0.90 +0.4
151,172 + +0.4
151,281 - +0.4
151,391 - -0.1
151,395 - -0.2
151,397 - -3.6
151,403 - -0.6
151,411 - +0.5
151,434 + +0.7
151,520 + +0.6
151,525 + +0.5
151,529 + +0.8
151,559 + +0.4
151,564 + +0.4
151,568 + -0.7
151,570 + -0.4
151,574 + +0.4
151,710 + +0.9
151,714 - -0.1
151,866 + 11828 mRNA_3460 0.11 +0.0
152,018 - 11828 mRNA_3460 0.18 -0.3
152,362 - 11828 mRNA_3460 0.33 +0.3
152,510 + 11828 mRNA_3460 0.40 -0.0
152,866 - 11828 mRNA_3460 0.56 +0.3
153,141 - 11828 mRNA_3460 0.69 +0.7
153,141 - 11828 mRNA_3460 0.69 +1.2
153,147 + 11828 mRNA_3460 0.69 +0.0
153,204 - 11828 mRNA_3460 0.72 -0.5
153,331 - 11828 mRNA_3460 0.77 -0.0
153,332 + 11828 mRNA_3460 0.77 +0.9
153,334 + 11828 mRNA_3460 0.78 -0.5
153,344 - 11828 mRNA_3460 0.78 +0.4
153,345 - 11828 mRNA_3460 0.78 +0.2
153,477 + 11828 mRNA_3460 0.84 +2.3
153,517 + 11828 mRNA_3460 0.86 -1.4
153,525 + 11828 mRNA_3460 0.86 +0.3
153,646 + -1.4
153,753 - +0.1
153,775 - +0.6
153,793 - -0.9
153,801 - -0.0
153,808 - +1.0
153,909 - -0.9
153,916 + +0.0
153,939 - +0.3
154,078 + +0.1
154,215 + +0.1
154,351 - +0.1
154,369 - +0.1
154,376 + -0.3

Or see this region's nucleotide sequence