Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3534

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11901 and 11902 are separated by 984 nucleotides11902 and 11903 are separated by 237 nucleotides mRNA_3533: 11901 - K08337 ATG7 ubiquitin-like modifier-activating enzyme ATG7, at 327,096 to 329,991 11901 mRNA_3534: 11902 - Hypothetical Protein, at 330,976 to 331,488 11902 mRNA_3535: 11903 - HMMPfam-Protein of unknown function (DUF2419)-PF10343, at 331,726 to 332,711 11903

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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330,208 + -0.7
330,213 + -0.1
330,232 + -0.3
330,242 - +0.6
330,343 + +1.1
330,361 - -0.6
330,485 - -1.3
330,509 + -0.0
330,653 + -0.2
331,078 + 11902 mRNA_3534 0.20 +0.2
331,081 - 11902 mRNA_3534 0.20 -0.6
331,234 - 11902 mRNA_3534 0.50 +1.9
331,236 + 11902 mRNA_3534 0.51 +1.1
331,379 + 11902 mRNA_3534 0.79 +0.3
331,487 - +0.0
331,509 - -0.1
331,514 + +0.5
331,520 - -0.1
331,538 + -0.5
331,651 - +0.1
332,134 - 11903 mRNA_3535 0.41 -0.6

Or see this region's nucleotide sequence