Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3653

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12020 and 12021 are separated by 125 nucleotides mRNA_3652: 12020 - K17278 PGRMC1_2 membrane-associated progesterone receptor component, at 259,462 to 260,271 12020 mRNA_3653: 12021 - KOG2437 Muskelin, at 260,397 to 263,923 12021

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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259,431 - -0.3
259,459 + +0.3
259,576 - 12020 mRNA_3652 0.14 +0.1
259,600 + 12020 mRNA_3652 0.17 +0.1
259,727 + 12020 mRNA_3652 0.33 -0.6
259,736 - 12020 mRNA_3652 0.34 +0.5
259,766 + 12020 mRNA_3652 0.38 +1.3
259,915 + 12020 mRNA_3652 0.56 +0.4
260,019 + 12020 mRNA_3652 0.69 +0.8
260,029 + 12020 mRNA_3652 0.70 +0.5
260,045 + 12020 mRNA_3652 0.72 -0.6
260,322 - -0.0
260,324 + +1.2
260,329 - -0.3
260,330 + +1.4
260,335 + -0.3
260,336 + -0.0
260,340 + +2.3
260,458 - -0.5
260,490 + +1.6
260,498 + +0.2
260,517 + -0.6
260,620 - +1.0
260,620 - +0.1
260,659 + +0.6
260,772 + 12021 mRNA_3653 0.11 +0.6
260,779 + 12021 mRNA_3653 0.11 +0.0
260,781 + 12021 mRNA_3653 0.11 -0.1
260,787 + 12021 mRNA_3653 0.11 -0.2
260,792 + 12021 mRNA_3653 0.11 +0.2
260,816 + 12021 mRNA_3653 0.12 +0.1
260,928 - 12021 mRNA_3653 0.15 -0.8
260,947 + 12021 mRNA_3653 0.16 -0.7
261,105 + 12021 mRNA_3653 0.20 -0.3
261,479 + 12021 mRNA_3653 0.31 -1.2
261,643 + 12021 mRNA_3653 0.35 -1.1
261,662 - 12021 mRNA_3653 0.36 -0.8
262,047 - 12021 mRNA_3653 0.47 +0.5
262,056 - 12021 mRNA_3653 0.47 +0.3
262,325 + 12021 mRNA_3653 0.55 -0.9
262,481 - 12021 mRNA_3653 0.59 -0.3
262,768 + 12021 mRNA_3653 0.67 -0.3
263,042 - 12021 mRNA_3653 0.75 -0.1
263,222 + 12021 mRNA_3653 0.80 +1.0
263,645 - +0.1
263,805 + +0.3
263,816 + +0.4
263,914 + -0.1
263,930 + +2.2
263,944 - -0.7
264,093 + +2.3
264,098 + +0.1
264,106 + +0.6
264,108 + -0.7
264,110 + -0.5
264,117 + -1.6
264,122 + -2.1
264,169 - +0.7
264,308 - +0.6
264,312 - +0.3
264,325 - -0.3
264,332 + +0.0
264,332 - -0.9
264,334 + +1.8
264,399 - +2.4
264,459 + -0.7
264,462 + -0.6
264,466 - -0.1
264,466 - -1.1
264,467 + -1.2
264,479 - +1.1
264,575 - +0.2
264,585 - +0.0
264,599 + +0.7
264,599 - -0.1
264,601 + +0.1
264,603 + +0.1
264,619 - -1.1
264,633 - -0.9
264,656 + -0.3
264,668 - +0.6
264,744 - +0.6
264,829 - +0.1
264,891 + -1.3
264,897 - -0.3

Or see this region's nucleotide sequence