Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3654

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12022 and 12023 are separated by 217 nucleotides mRNA_3654: 12022 - K11204 GCLC glutamate--cysteine ligase catalytic subunit, at 269,358 to 271,210 12022 mRNA_3655: 12023 - KOG1721 FOG Zn-finger, at 271,428 to 272,912 12023

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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268,770 + +0.3
268,811 - +0.4
268,817 - -1.0
268,818 - +0.0
268,821 - -0.2
268,912 - +0.5
268,984 + +0.5
268,989 + +0.7
269,009 + +0.8
269,032 - +0.1
269,089 - +0.1
269,138 - -0.1
269,151 - +0.2
269,174 + -0.4
269,189 - -0.8
269,228 - -0.3
269,232 + +0.0
269,256 - +0.5
269,312 + -0.2
269,330 - -0.2
269,339 - +0.3
269,343 + -1.9
269,353 + +0.1
269,354 - +0.2
269,355 + -1.0
269,357 + +0.8
269,358 + +0.5
269,358 + +0.3
269,375 + +0.1
269,377 + -0.1
269,397 + -1.9
269,397 - -0.6
269,464 - -1.1
269,477 - +0.3
269,479 - -0.1
269,479 - +0.1
269,481 - +0.2
269,482 - +0.2
269,502 + +0.2
269,518 - -1.1
269,641 + 12022 mRNA_3654 0.15 +1.4
269,650 - 12022 mRNA_3654 0.16 +1.0
269,752 - 12022 mRNA_3654 0.21 +0.8
269,793 - 12022 mRNA_3654 0.23 -0.1
269,899 - 12022 mRNA_3654 0.29 +0.9
269,900 - 12022 mRNA_3654 0.29 -0.5
269,921 - 12022 mRNA_3654 0.30 -0.7
269,930 - 12022 mRNA_3654 0.31 -1.4
269,934 - 12022 mRNA_3654 0.31 -0.0
269,935 + 12022 mRNA_3654 0.31 +0.7
269,935 + 12022 mRNA_3654 0.31 -0.3
269,941 - 12022 mRNA_3654 0.31 -1.3
269,950 - 12022 mRNA_3654 0.32 -0.9
269,974 - 12022 mRNA_3654 0.33 -1.0
269,975 - 12022 mRNA_3654 0.33 +0.8
269,976 + 12022 mRNA_3654 0.33 -0.6
269,976 + 12022 mRNA_3654 0.33 -0.4
269,978 - 12022 mRNA_3654 0.33 -0.9
269,990 - 12022 mRNA_3654 0.34 -0.9
270,017 + 12022 mRNA_3654 0.36 -1.2
270,019 + 12022 mRNA_3654 0.36 -0.4
270,027 - 12022 mRNA_3654 0.36 -0.5
270,028 + 12022 mRNA_3654 0.36 +1.3
270,053 + 12022 mRNA_3654 0.38 -0.1
270,053 + 12022 mRNA_3654 0.38 -1.3
270,054 - 12022 mRNA_3654 0.38 -0.2
270,062 + 12022 mRNA_3654 0.38 -0.2
270,090 + 12022 mRNA_3654 0.40 -1.4
270,192 - 12022 mRNA_3654 0.45 +0.2
270,278 - 12022 mRNA_3654 0.50 -0.0
270,314 + 12022 mRNA_3654 0.52 -0.7
270,350 - 12022 mRNA_3654 0.54 +0.4
270,407 - 12022 mRNA_3654 0.57 +0.2
270,444 - 12022 mRNA_3654 0.59 +1.5
270,485 - 12022 mRNA_3654 0.61 +0.0
270,486 + 12022 mRNA_3654 0.61 -0.5
270,492 + 12022 mRNA_3654 0.61 -0.6
270,497 - 12022 mRNA_3654 0.61 +1.4
270,523 - 12022 mRNA_3654 0.63 +0.2
270,626 - 12022 mRNA_3654 0.68 +0.5
270,646 + 12022 mRNA_3654 0.70 +0.0
270,650 + 12022 mRNA_3654 0.70 -0.6
270,655 + 12022 mRNA_3654 0.70 +1.5
270,811 + 12022 mRNA_3654 0.78 +0.0
270,911 - 12022 mRNA_3654 0.84 -0.0
270,934 - 12022 mRNA_3654 0.85 -0.8
271,076 - -0.6
271,104 - -1.3
271,116 + -1.0
271,177 - -0.1
271,177 - +1.6
271,248 - -0.7
271,249 + +0.1
271,252 - +0.0
271,254 + -0.1
271,270 + +0.6
271,379 - +1.6
271,405 - +1.5
271,428 + +0.3
271,459 - +0.3
271,552 + -0.5
271,711 + 12023 mRNA_3655 0.19 -0.3
271,836 - 12023 mRNA_3655 0.27 +0.0
271,837 + 12023 mRNA_3655 0.28 -1.0
272,009 - 12023 mRNA_3655 0.39 -0.3

Or see this region's nucleotide sequence