Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3660

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12027 and 12028 are separated by 757 nucleotides12028 and 12029 overlap by 8 nucleotides12029 and 12030 are separated by 123 nucleotides mRNA_3659: 12027 - Hypothetical Protein, at 283,501 to 284,501 12027 mRNA_3660: 12028 - HMMPfam-ATPase family associated with various cellular activities (AAA)-PF00004,SUPERFAMILY--SSF52540, at 285,259 to 286,189 12028 mRNA_3661: 12029 - Hypothetical Protein, at 286,182 to 286,643 12029 mRNA_3662: 12030 - KOG2768 Translation initiation factor 2, beta subunit (eIF-2beta), at 286,767 to 288,003 12030

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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284,481 - -0.7
284,664 + +1.1
285,222 - -0.1
285,346 - +0.2
285,366 + 12028 mRNA_3660 0.11 +0.4
285,525 + 12028 mRNA_3660 0.29 -0.4
285,534 + 12028 mRNA_3660 0.30 -0.4
285,805 + 12028 mRNA_3660 0.59 +0.0
286,475 - 12029 mRNA_3661 0.63 -0.5
286,530 + 12029 mRNA_3661 0.75 -1.4
286,532 - 12029 mRNA_3661 0.76 -0.1
286,536 + 12029 mRNA_3661 0.77 +0.7
286,541 + 12029 mRNA_3661 0.78 +0.3
286,545 - 12029 mRNA_3661 0.79 +0.1
286,560 + 12029 mRNA_3661 0.82 +0.6
286,591 - 12029 mRNA_3661 0.89 +0.1
286,706 - -0.6
286,720 + +0.4
286,721 - +0.0
286,767 + -0.0
286,858 + -0.3
286,879 - +0.9
286,890 - -0.0
286,891 + 12030 mRNA_3662 0.10 -1.0
286,922 - 12030 mRNA_3662 0.13 -0.5
286,972 - 12030 mRNA_3662 0.17 +0.3
286,982 + 12030 mRNA_3662 0.17 -0.1
287,010 + 12030 mRNA_3662 0.20 -1.4
287,063 - 12030 mRNA_3662 0.24 -0.4
287,063 + 12030 mRNA_3662 0.24 +0.2
287,070 + 12030 mRNA_3662 0.24 -0.1
287,079 - 12030 mRNA_3662 0.25 -0.3
287,085 - 12030 mRNA_3662 0.26 -0.1
287,092 + 12030 mRNA_3662 0.26 +0.8
287,100 + 12030 mRNA_3662 0.27 +0.4
287,107 - 12030 mRNA_3662 0.27 -0.8
287,108 + 12030 mRNA_3662 0.28 +0.7

Or see this region's nucleotide sequence