Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3750

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12117 and 12118 are separated by 84 nucleotides12118 and 12119 are separated by 227 nucleotides mRNA_3749: 12117 - HMMPfam-Nuclear pore complex assembly-PF13934,SUPERFAMILY--SSF57850, at 492,760 to 497,695 12117 mRNA_3750: 12118 - K13421 UMPS uridine monophosphate synthetase, at 497,780 to 498,794 12118 mRNA_3751: 12119 - K11348 BRPF1 bromodomain and PHD finger-containing protein 1, at 499,022 to 503,388 12119

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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496,889 - 12117 mRNA_3749 0.84 -0.3
496,906 + 12117 mRNA_3749 0.84 -0.6
496,922 + 12117 mRNA_3749 0.84 -0.1
497,352 + -0.3
498,806 - -1.7
498,938 + +1.4
499,386 - -0.4
499,387 - +0.4
499,520 - 12119 mRNA_3751 0.11 -0.4
499,636 + 12119 mRNA_3751 0.14 -0.5
499,671 - 12119 mRNA_3751 0.15 -0.6
499,687 - 12119 mRNA_3751 0.15 +0.1

Or see this region's nucleotide sequence