Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3774

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12142 and 12143 are separated by 663 nucleotides mRNA_3774: 12142 - K01764 E4.4.1.17 cytochrome c heme-lyase, at 551,229 to 552,274 12142 mRNA_3775: 12143 - KOG2913 Predicted membrane protein, at 552,938 to 553,662 12143

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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550,352 + +0.8
550,362 + +0.1
550,488 + +0.3
550,490 - -1.1
551,035 + -0.3
551,079 + +0.8
552,230 - +0.6
552,402 + +0.6
552,538 - +0.2
552,709 + -0.3
552,819 - +0.5
552,842 - -1.0
553,013 + 12143 mRNA_3775 0.10 -0.1

Or see this region's nucleotide sequence