Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3783

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12150 and 12151 are separated by 926 nucleotides12151 and 12152 are separated by 510 nucleotides mRNA_3782: 12150 - K04354 PPP2R2 serine/threonine-protein phosphatase 2A regulatory subunit B, at 568,603 to 571,218 12150 mRNA_3783: 12151 - KOG1502 Flavonol reductase/cinnamoyl-CoA reductase, at 572,145 to 573,439 12151 mRNA_3784: 12152 - KOG1188 WD40 repeat protein, at 573,950 to 575,324 12152

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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571,481 + +0.3
572,041 - -0.5
572,053 - -1.8
572,060 + -0.7
572,258 + -0.2
572,353 + 12151 mRNA_3783 0.16 -0.5
572,651 - 12151 mRNA_3783 0.39 +1.4
572,673 - 12151 mRNA_3783 0.41 +0.0
572,674 + 12151 mRNA_3783 0.41 +0.1
573,082 - 12151 mRNA_3783 0.72 -0.2
573,082 - 12151 mRNA_3783 0.72 +1.5
573,516 + -0.1
573,520 - -1.7
573,539 + -0.5
573,542 - -0.1
573,675 - +0.8
574,322 + 12152 mRNA_3784 0.27 +0.6

Or see this region's nucleotide sequence