Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3828

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12195 and 12196 are separated by 640 nucleotides12196 and 12197 are separated by 729 nucleotides mRNA_3827: 12195 - Hypothetical Protein, at 676,929 to 682,172 12195 mRNA_3828: 12196 - Hypothetical Protein, at 682,813 to 683,280 12196 mRNA_3829: 12197 - KOG0519 Sensory transduction histidine kinase, at 684,010 to 687,695 12197

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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682,106 - +0.4
682,363 - -0.5
682,364 + +0.1
682,367 - -0.9
682,382 + +1.3
682,520 - +0.4
682,529 + +1.6
682,541 + +1.1
682,543 - +0.3
682,657 + +0.5
682,675 - +0.8
682,681 + +1.0
682,705 - -0.8
682,706 + +1.2
682,709 + +0.2
682,816 - +1.3
682,818 - +0.4
682,831 + +0.6
682,834 + -0.2
682,876 + 12196 mRNA_3828 0.13 +0.2
682,969 - 12196 mRNA_3828 0.33 -0.4
682,969 - 12196 mRNA_3828 0.33 -2.3
683,108 - 12196 mRNA_3828 0.63 +0.2
683,128 - 12196 mRNA_3828 0.67 -0.4
683,139 - 12196 mRNA_3828 0.70 -0.6
683,143 - 12196 mRNA_3828 0.71 +0.0
683,149 + 12196 mRNA_3828 0.72 +0.8
683,152 - 12196 mRNA_3828 0.72 -0.1
683,156 + 12196 mRNA_3828 0.73 +0.0
683,166 - 12196 mRNA_3828 0.75 -0.5
683,166 - 12196 mRNA_3828 0.75 -0.1
683,167 - 12196 mRNA_3828 0.76 -1.1
683,168 + 12196 mRNA_3828 0.76 -0.4
683,170 - 12196 mRNA_3828 0.76 -1.1
683,172 + 12196 mRNA_3828 0.77 +1.0
683,173 - 12196 mRNA_3828 0.77 +0.2
683,174 + 12196 mRNA_3828 0.77 +1.7
683,179 + 12196 mRNA_3828 0.78 +0.1
683,190 + 12196 mRNA_3828 0.81 -0.4
683,196 - 12196 mRNA_3828 0.82 -0.3
683,201 + 12196 mRNA_3828 0.83 -0.3
683,205 + 12196 mRNA_3828 0.84 +0.2
683,205 + 12196 mRNA_3828 0.84 -0.1
683,213 + 12196 mRNA_3828 0.85 -0.1
683,217 - 12196 mRNA_3828 0.86 +1.0
683,218 + 12196 mRNA_3828 0.87 +0.1
683,219 - 12196 mRNA_3828 0.87 -0.1
683,226 + 12196 mRNA_3828 0.88 +0.1
683,230 - 12196 mRNA_3828 0.89 +0.4
683,233 + 12196 mRNA_3828 0.90 -0.8
683,236 + +0.2
683,264 + +0.5
683,268 + +0.4
683,331 - +1.4
683,366 - -1.6
683,366 + -1.1
683,367 - +0.5
683,376 - +0.6
683,379 - -0.9
683,380 - -0.6
683,383 + +0.2
683,385 - +0.6
683,402 - -0.5
683,409 - -0.1
683,410 + -0.6
683,410 - -1.3
683,410 - -0.2
683,411 - -0.2
683,414 + +0.0
683,417 - +0.0
683,418 + -0.7
683,419 - +0.3
683,421 - -0.2
683,423 + -0.4
683,438 - +1.2
683,444 - +0.4
683,448 - -0.3
683,461 + +1.1
683,463 - -0.8
683,465 + -1.1
683,467 - +0.4
683,469 - +0.6
683,475 - +0.8
683,476 - +0.5
683,478 + -0.5
683,480 - +0.9
683,485 + -0.1
683,504 + +1.1
683,507 - -0.6
683,508 + -0.4
683,510 + -0.6
683,511 - +0.6
683,515 + -0.4
683,525 + +0.0
683,600 - -0.7
683,626 - +0.6
683,638 + +0.8
683,692 + +0.7
683,792 + -0.1
683,792 + -0.1
683,794 + +0.6
683,797 - -0.2
683,802 - -0.6
683,813 + -0.0
683,821 - -0.3
683,824 - -1.0
683,950 + -0.0
684,110 - -0.7

Or see this region's nucleotide sequence