Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3905

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12272 and 12273 are separated by 619 nucleotides mRNA_3904: 12272 - KOG1176 Acyl-CoA synthetase, at 859,161 to 861,426 12272 mRNA_3905: 12273 - KOG0118 FOG RRM domain, at 862,046 to 863,996 12273

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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861,071 - 12272 mRNA_3904 0.84 +0.4
861,499 - -0.2
861,702 + +0.5
862,112 - +0.3
862,377 + 12273 mRNA_3905 0.17 +0.3
862,508 - 12273 mRNA_3905 0.24 +0.1
863,103 + 12273 mRNA_3905 0.54 -0.9
863,767 + 12273 mRNA_3905 0.88 +1.7
863,910 + +0.5
863,994 - -0.2
864,264 - -0.8
864,305 + +1.5
864,449 + +1.6
864,734 + +1.1
864,761 - +0.3
864,870 - +0.2
864,921 - +0.3

Or see this region's nucleotide sequence