Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3913

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12280 and 12281 are separated by 209 nucleotides12281 and 12282 are separated by 290 nucleotides mRNA_3912: 12280 - HMMPfam-Protein of unknown function (DUF2422)-PF10337, at 881,146 to 884,820 12280 mRNA_3913: 12281 - SUPERFAMILY--SSF48452, at 885,030 to 886,525 12281 mRNA_3914: 12282 - HMMPfam-Domain of unknown function (DUF1708)-PF08101,ProSiteProfiles-Rho GTPase-activating proteins domain profile.-PS50238,SMART-GTPase-activator protein for Rho-like GTPases-SM00324,SUPERFAMILY--SSF48350, at 886,816 to 890,417 12282

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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884,371 - 12280 mRNA_3912 0.88 -0.3
884,406 - 12280 mRNA_3912 0.89 +0.7
884,443 + 12280 mRNA_3912 0.90 -1.4
884,528 - +0.3
884,564 - -0.4
884,840 - -0.8
884,860 + +0.5
884,957 - +1.1
884,958 - +0.8
886,596 + -0.7
886,608 - +0.7
886,619 + +0.6
886,630 - +0.5
886,752 - -0.4
887,065 + -0.5
887,148 + -0.6
887,230 + 12282 mRNA_3914 0.11 -0.4

Or see this region's nucleotide sequence