Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3917

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12284 and 12285 are separated by 144 nucleotides12285 and 12286 are separated by 591 nucleotides mRNA_3916: 12284 - K02736 PSMB4 20S proteasome subunit beta 7, at 892,527 to 893,886 12284 mRNA_3917: 12285 - KOG4479 Transcription factor e(y)2, at 894,031 to 894,594 12285 mRNA_3918: 12286 - KOG0024 Sorbitol dehydrogenase, at 895,186 to 897,368 12286

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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893,871 - -0.3
894,047 + +0.1
894,337 - 12285 mRNA_3917 0.54 -0.0
894,437 - 12285 mRNA_3917 0.72 +1.7
894,482 - 12285 mRNA_3917 0.80 +1.6
894,780 + -0.4
894,794 - +1.1
894,915 - +0.2
895,072 + -1.1
895,203 - -0.1

Or see this region's nucleotide sequence