Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3922

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12289 and 12290 are separated by 442 nucleotides12290 and 12291 are separated by 282 nucleotides mRNA_3921: 12289 - Hypothetical Protein, at 910,029 to 911,741 12289 mRNA_3922: 12290 - K11099 SNRPG, SMG small nuclear ribonucleoprotein G, at 912,184 to 912,720 12290 mRNA_3923: 12291 - K01465 URA4, pyrC dihydroorotase, at 913,003 to 914,315 12291

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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911,803 + -0.1
911,979 + +2.1
911,984 - -2.0
911,987 + -0.2
912,009 + +0.0
912,110 + +0.6
912,116 - +0.7
912,119 - -0.7
912,123 - -0.9
912,125 - +0.0
912,126 - -0.4
912,145 - +0.3
912,149 - +0.7
913,001 - -1.7

Or see this region's nucleotide sequence