Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4007

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12374 and 12375 are separated by 251 nucleotides12375 and 12376 are separated by 300 nucleotides mRNA_4006: 12374 - Hypothetical Protein, at 1,133,171 to 1,133,679 12374 mRNA_4007: 12375 - K12373 HEXA_B hexosaminidase, at 1,133,931 to 1,136,432 12375 mRNA_4008: 12376 - K03695 clpB ATP-dependent Clp protease ATP-binding subunit ClpB, at 1,136,733 to 1,139,810 12376

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,133,054 + +0.6
1,133,294 - 12374 mRNA_4006 0.24 +0.1
1,133,957 + -0.3
1,134,425 + 12375 mRNA_4007 0.20 -0.6
1,134,446 - 12375 mRNA_4007 0.21 -0.3
1,134,727 - 12375 mRNA_4007 0.32 +0.1
1,134,974 - 12375 mRNA_4007 0.42 -1.0
1,135,298 - 12375 mRNA_4007 0.55 -1.1
1,135,320 + 12375 mRNA_4007 0.56 -0.6
1,135,749 - 12375 mRNA_4007 0.73 +0.1
1,136,062 - 12375 mRNA_4007 0.85 +0.2
1,136,175 + 12375 mRNA_4007 0.90 -0.5
1,136,180 - 12375 mRNA_4007 0.90 +2.5
1,136,490 - +0.1
1,136,493 - -0.1
1,136,497 - -0.2
1,136,498 - -0.0
1,136,530 + -2.6
1,136,531 + -0.7
1,137,070 + 12376 mRNA_4008 0.11 +0.7

Or see this region's nucleotide sequence