Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4166

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12533 and 12534 are separated by 398 nucleotides12534 and 12535 are separated by 516 nucleotides mRNA_4165: 12533 - Hypothetical Protein, at 1,513,991 to 1,515,479 12533 mRNA_4166: 12534 - K12597 AIR1_2 protein AIR1/2, at 1,515,878 to 1,517,607 12534 mRNA_4167: 12535 - Hypothetical Protein, at 1,518,124 to 1,518,875 12535

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,515,006 - 12533 mRNA_4165 0.68 +0.1
1,515,020 + 12533 mRNA_4165 0.69 +1.6
1,515,030 - 12533 mRNA_4165 0.70 -0.0
1,515,274 - 12533 mRNA_4165 0.86 +0.8
1,515,310 + 12533 mRNA_4165 0.89 +0.7
1,515,318 + 12533 mRNA_4165 0.89 +0.7
1,515,321 + 12533 mRNA_4165 0.89 -0.3
1,515,332 + +1.9
1,515,464 - +1.2
1,515,467 + -0.1
1,515,481 + +0.7
1,515,485 + -0.7
1,515,604 - -0.0
1,515,612 - +0.6
1,515,622 + -0.6
1,515,631 + +0.5
1,515,634 + -0.1
1,515,641 - -1.3
1,515,734 - -0.2
1,515,738 - -0.1
1,515,748 + +0.0
1,515,756 - -0.4
1,515,758 + -0.3
1,515,879 - +0.7
1,515,897 - -0.1
1,515,910 - +0.2
1,515,912 + -0.1
1,515,925 + -1.4
1,515,925 + +0.4
1,515,925 + -0.2
1,516,060 + 12534 mRNA_4166 0.11 +0.2
1,516,063 + 12534 mRNA_4166 0.11 +0.5
1,516,090 + 12534 mRNA_4166 0.12 +1.5
1,516,540 - 12534 mRNA_4166 0.38 +1.1
1,516,653 + 12534 mRNA_4166 0.45 -0.3
1,516,666 + 12534 mRNA_4166 0.46 +0.3
1,517,013 - 12534 mRNA_4166 0.66 -1.6
1,517,075 + 12534 mRNA_4166 0.69 -0.3
1,517,371 - 12534 mRNA_4166 0.86 -1.2
1,517,653 + +0.5
1,517,967 + -0.3
1,517,988 + -0.5
1,518,080 - -0.3
1,518,087 - -0.1
1,518,090 - -0.7
1,518,098 + +0.5
1,518,099 + +2.6
1,518,105 + +0.3
1,518,107 + +0.9
1,518,236 - 12535 mRNA_4167 0.15 +0.4
1,518,237 + 12535 mRNA_4167 0.15 -0.9
1,518,251 - 12535 mRNA_4167 0.17 +0.9
1,518,253 + 12535 mRNA_4167 0.17 -0.1
1,518,254 + 12535 mRNA_4167 0.17 -0.5
1,518,257 - 12535 mRNA_4167 0.18 -0.5
1,518,258 + 12535 mRNA_4167 0.18 -0.5
1,518,406 - 12535 mRNA_4167 0.38 -0.6
1,518,424 - 12535 mRNA_4167 0.40 +0.5
1,518,558 - 12535 mRNA_4167 0.58 -0.0

Or see this region's nucleotide sequence