Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4174

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12542 and 12543 are separated by 486 nucleotides mRNA_4174: 12542 - KOG4305 RhoGEF GTPase, at 1,535,765 to 1,540,719 12542 mRNA_4175: 12543 - K03939 NDUFS6 NADH dehydrogenase (ubiquinone) Fe-S protein 6, at 1,541,206 to 1,541,936 12543

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,534,796 + +0.3
1,534,819 - +1.4
1,534,852 - +0.5
1,534,896 - +0.6
1,535,167 + -0.4
1,535,222 + +0.3
1,535,276 - -0.0
1,535,276 + +0.4
1,535,692 - +1.7
1,535,888 + -0.5
1,535,891 + -0.9
1,536,048 + +0.7
1,536,048 - +0.7
1,536,105 + -0.1
1,536,163 + -0.6
1,536,338 - 12542 mRNA_4174 0.12 -1.1
1,536,592 + 12542 mRNA_4174 0.17 -1.4
1,537,195 - 12542 mRNA_4174 0.29 +0.3
1,537,308 + 12542 mRNA_4174 0.31 -1.3
1,537,346 + 12542 mRNA_4174 0.32 -0.9
1,537,430 - 12542 mRNA_4174 0.34 +0.3
1,537,498 + 12542 mRNA_4174 0.35 -0.3
1,538,198 + 12542 mRNA_4174 0.49 +0.8
1,538,262 - 12542 mRNA_4174 0.50 -0.4
1,538,625 - 12542 mRNA_4174 0.58 -0.2
1,538,651 + 12542 mRNA_4174 0.58 -1.2
1,539,051 + 12542 mRNA_4174 0.66 -0.0
1,539,335 - 12542 mRNA_4174 0.72 +0.1
1,539,375 + 12542 mRNA_4174 0.73 +0.5
1,539,563 - 12542 mRNA_4174 0.77 +0.2
1,539,923 + 12542 mRNA_4174 0.84 +0.2
1,540,053 + 12542 mRNA_4174 0.87 +0.1
1,540,338 + +0.6
1,540,481 - -0.4
1,540,513 - -0.4
1,540,629 - -0.3
1,540,648 + -0.7
1,540,689 + -0.8
1,540,783 + -0.9
1,540,785 + -1.2
1,540,793 - +1.1
1,540,794 - -0.6
1,540,795 - -0.0
1,540,798 + +0.4
1,540,824 + -0.5
1,540,827 + -0.0
1,540,934 - -2.3
1,540,947 - +0.0
1,540,953 + +1.0
1,540,964 - -0.5
1,540,973 + -0.8
1,541,071 + -1.9
1,541,250 + -1.6
1,541,393 - 12543 mRNA_4175 0.26 -0.8
1,541,399 + 12543 mRNA_4175 0.26 -1.0
1,541,538 - 12543 mRNA_4175 0.45 -0.5
1,541,575 + 12543 mRNA_4175 0.50 -1.4
1,541,661 + 12543 mRNA_4175 0.62 -1.3
1,541,662 + 12543 mRNA_4175 0.62 -1.3
1,541,694 - 12543 mRNA_4175 0.67 -1.1
1,541,704 - 12543 mRNA_4175 0.68 -1.4

Or see this region's nucleotide sequence