Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4176

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12543 and 12544 are separated by 104 nucleotides12544 and 12545 are separated by 272 nucleotides mRNA_4175: 12543 - K03939 NDUFS6 NADH dehydrogenase (ubiquinone) Fe-S protein 6, at 1,541,206 to 1,541,936 12543 mRNA_4176: 12544 - KOG4093 Uncharacterized conserved protein, at 1,542,041 to 1,542,823 12544 mRNA_4177: 12545 - K15356 VRG4, GONST1 GDP-mannose transporter, at 1,543,096 to 1,544,844 12545

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,541,071 + -1.9
1,541,250 + -1.6
1,541,393 - 12543 mRNA_4175 0.26 -0.8
1,541,399 + 12543 mRNA_4175 0.26 -1.0
1,541,538 - 12543 mRNA_4175 0.45 -0.5
1,541,575 + 12543 mRNA_4175 0.50 -1.4
1,541,661 + 12543 mRNA_4175 0.62 -1.3
1,541,662 + 12543 mRNA_4175 0.62 -1.3
1,541,694 - 12543 mRNA_4175 0.67 -1.1
1,541,704 - 12543 mRNA_4175 0.68 -1.4
1,541,978 - -1.3
1,542,943 + -0.9

Or see this region's nucleotide sequence