Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4204

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12571 and 12572 are separated by 256 nucleotides12572 and 12573 are separated by 677 nucleotides mRNA_4203: 12571 - K19842 ROM1_2 RHO1 GDP-GTP exchange protein 1/2, at 1,601,510 to 1,605,241 12571 mRNA_4204: 12572 - K15292 STXBP1, MUNC18-1 syntaxin-binding protein 1, at 1,605,498 to 1,608,617 12572 mRNA_4205: 12573 - K09276 YBX1, NSEP1 Y-box-binding protein 1, at 1,609,295 to 1,611,072 12573

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,604,562 + 12571 mRNA_4203 0.82 +0.5
1,605,281 - +0.2
1,605,284 + -0.5
1,605,298 - -0.0
1,605,302 + -0.7
1,605,314 + +0.6
1,605,410 - -0.4
1,605,416 + -0.8
1,605,434 - +0.3
1,605,445 + -0.5
1,605,456 + -0.2
1,605,458 + -0.1
1,606,683 + 12572 mRNA_4204 0.38 +0.1
1,608,695 - -1.0
1,608,946 - -0.1
1,608,982 + +1.4
1,609,156 - +0.6

Or see this region's nucleotide sequence