Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4306

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12673 and 12674 are separated by 316 nucleotides12674 and 12675 are separated by 43 nucleotides mRNA_4305: 12673 - SUPERFAMILY--SSF69989, at 1,856,917 to 1,859,154 12673 mRNA_4306: 12674 - Hypothetical Protein, at 1,859,471 to 1,861,932 12674 mRNA_4307: 12675 - Hypothetical Protein, at 1,861,976 to 1,862,718 12675

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,858,779 - 12673 mRNA_4305 0.83 +1.4
1,858,866 + 12673 mRNA_4305 0.87 -0.3
1,859,037 - +1.0
1,859,047 - -0.4
1,859,695 - +0.2
1,859,724 - 12674 mRNA_4306 0.10 -0.3
1,859,985 - 12674 mRNA_4306 0.21 +0.4
1,860,557 + 12674 mRNA_4306 0.44 -1.9
1,860,652 + 12674 mRNA_4306 0.48 -1.8
1,860,843 - 12674 mRNA_4306 0.56 -0.6
1,860,866 + 12674 mRNA_4306 0.57 +0.4
1,861,290 - 12674 mRNA_4306 0.74 +0.5
1,861,291 + 12674 mRNA_4306 0.74 -1.5
1,861,467 + 12674 mRNA_4306 0.81 -1.2
1,861,470 + 12674 mRNA_4306 0.81 -0.2
1,861,604 - 12674 mRNA_4306 0.87 +0.5
1,861,738 + -1.0
1,861,771 - -0.4
1,861,774 - -1.2
1,861,775 + -0.3
1,861,868 + +0.5
1,861,878 - +0.3
1,861,896 + -0.4
1,861,911 - +1.4
1,861,920 + -1.1
1,861,926 - -0.6
1,861,930 - -0.7
1,861,932 - -0.2
1,862,074 - 12675 mRNA_4307 0.13 +1.5
1,862,110 - 12675 mRNA_4307 0.18 +0.2
1,862,113 - 12675 mRNA_4307 0.18 -0.0
1,862,195 - 12675 mRNA_4307 0.29 -0.3
1,862,199 + 12675 mRNA_4307 0.30 -1.3
1,862,209 - 12675 mRNA_4307 0.31 +0.7
1,862,212 + 12675 mRNA_4307 0.32 +0.9
1,862,214 + 12675 mRNA_4307 0.32 -0.1
1,862,216 - 12675 mRNA_4307 0.32 -0.4
1,862,217 + 12675 mRNA_4307 0.32 -1.5
1,862,218 + 12675 mRNA_4307 0.33 +0.1
1,862,218 - 12675 mRNA_4307 0.33 +0.1
1,862,219 - 12675 mRNA_4307 0.33 -0.2
1,862,224 - 12675 mRNA_4307 0.33 +0.4
1,862,226 + 12675 mRNA_4307 0.34 -0.1
1,862,234 + 12675 mRNA_4307 0.35 -0.5
1,862,236 - 12675 mRNA_4307 0.35 -0.3
1,862,237 + 12675 mRNA_4307 0.35 +0.3
1,862,240 - 12675 mRNA_4307 0.36 -0.4
1,862,240 + 12675 mRNA_4307 0.36 +0.4
1,862,248 - 12675 mRNA_4307 0.37 +0.4
1,862,253 - 12675 mRNA_4307 0.37 -0.8
1,862,253 - 12675 mRNA_4307 0.37 +2.0
1,862,253 - 12675 mRNA_4307 0.37 +1.2
1,862,295 - 12675 mRNA_4307 0.43 +0.1
1,862,298 + 12675 mRNA_4307 0.43 -0.3
1,862,311 + 12675 mRNA_4307 0.45 -0.4
1,862,322 - 12675 mRNA_4307 0.47 +2.5
1,862,332 - 12675 mRNA_4307 0.48 -0.6
1,862,332 + 12675 mRNA_4307 0.48 +0.5
1,862,334 - 12675 mRNA_4307 0.48 +0.1
1,862,337 + 12675 mRNA_4307 0.49 +0.2
1,862,338 + 12675 mRNA_4307 0.49 -0.3
1,862,340 - 12675 mRNA_4307 0.49 +0.5
1,862,341 - 12675 mRNA_4307 0.49 -0.2
1,862,343 + 12675 mRNA_4307 0.49 +1.6
1,862,343 + 12675 mRNA_4307 0.49 +0.1
1,862,346 + 12675 mRNA_4307 0.50 -0.1
1,862,348 + 12675 mRNA_4307 0.50 -0.0
1,862,354 - 12675 mRNA_4307 0.51 -1.6
1,862,354 - 12675 mRNA_4307 0.51 +0.6
1,862,357 - 12675 mRNA_4307 0.51 -0.9
1,862,364 + 12675 mRNA_4307 0.52 -0.1
1,862,364 + 12675 mRNA_4307 0.52 -1.6
1,862,365 + 12675 mRNA_4307 0.52 +0.3
1,862,367 - 12675 mRNA_4307 0.53 +2.3
1,862,368 + 12675 mRNA_4307 0.53 -0.3
1,862,369 + 12675 mRNA_4307 0.53 -0.1
1,862,370 + 12675 mRNA_4307 0.53 +0.5
1,862,378 - 12675 mRNA_4307 0.54 -0.9
1,862,380 + 12675 mRNA_4307 0.54 +0.1
1,862,380 + 12675 mRNA_4307 0.54 +0.1
1,862,386 + 12675 mRNA_4307 0.55 -0.6
1,862,391 + 12675 mRNA_4307 0.56 -0.1
1,862,394 + 12675 mRNA_4307 0.56 -0.2
1,862,401 - 12675 mRNA_4307 0.57 +0.0
1,862,406 - 12675 mRNA_4307 0.58 +1.0
1,862,436 - 12675 mRNA_4307 0.62 -0.1
1,862,448 + 12675 mRNA_4307 0.64 -1.0
1,862,474 + 12675 mRNA_4307 0.67 -0.9
1,862,523 - 12675 mRNA_4307 0.74 -0.0
1,862,524 + 12675 mRNA_4307 0.74 +0.7
1,862,530 + 12675 mRNA_4307 0.75 +0.3
1,862,547 + 12675 mRNA_4307 0.77 -2.0
1,862,551 - 12675 mRNA_4307 0.77 -0.0
1,862,592 + 12675 mRNA_4307 0.83 +1.9
1,862,595 - 12675 mRNA_4307 0.83 +1.5
1,862,603 - 12675 mRNA_4307 0.84 +0.2
1,862,604 - 12675 mRNA_4307 0.85 +0.1
1,862,606 + 12675 mRNA_4307 0.85 +0.4
1,862,649 + -0.6
1,862,680 + -0.2
1,862,702 + +1.0
1,862,710 + +0.8
1,862,713 + +0.2
1,862,719 + +1.3
1,862,721 - -1.0
1,862,744 - -0.3
1,862,749 - -0.2
1,862,762 + +0.4
1,862,763 + -0.3
1,862,772 - -1.1
1,862,866 - +0.1
1,862,873 - +0.5
1,862,888 + +0.8
1,862,891 + -1.9
1,862,916 + -0.8
1,862,924 - -1.8
1,862,928 + -1.5
1,862,931 - +0.4

Or see this region's nucleotide sequence