Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4373

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12740 and 12741 are separated by 204 nucleotides12741 and 12742 are separated by 141 nucleotides mRNA_4372: 12740 - KOG2533 Permease of the major facilitator superfamily, at 38,452 to 41,065 12740 mRNA_4373: 12741 - SUPERFAMILY--SSF52058, at 41,270 to 42,990 12741 mRNA_4374: 12742 - K00232 E1.3.3.6, ACOX1, ACOX3 acyl-CoA oxidase, at 43,132 to 46,033 12742

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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40,418 + 12740 mRNA_4372 0.75 -0.5
40,539 - 12740 mRNA_4372 0.80 +0.6
40,543 - 12740 mRNA_4372 0.80 -0.5
40,856 + -0.1
40,979 + -1.7
41,037 + -0.0
41,124 - -0.2
41,125 - +0.0
41,127 + -0.4
41,129 + +2.4
41,136 - +0.8
41,137 + +0.1
41,137 + +0.2
41,138 - -0.0
41,139 - +0.7
41,139 + -1.2
41,141 - -0.6
41,152 - +0.7
41,154 + -0.7
41,156 - +0.1
41,156 - +1.0
41,157 - -0.1
41,159 + +0.4
41,163 + +0.1
41,163 + -0.3
41,163 - -1.4
41,166 - -0.5
41,166 + +0.2
41,171 + -0.2
41,200 - +0.4
41,222 + +0.2
41,233 - +0.3
41,234 - +0.2
41,254 + -0.2
41,256 - -0.3
41,264 + -0.3
41,269 + +0.5
41,355 + +0.7
41,382 + +0.2
41,382 + +0.1
41,397 + -1.1
41,430 - +1.1
41,490 + 12741 mRNA_4373 0.13 +0.8
41,512 - 12741 mRNA_4373 0.14 -1.4
41,516 - 12741 mRNA_4373 0.14 -0.1
41,783 + 12741 mRNA_4373 0.30 -0.2
41,851 - 12741 mRNA_4373 0.34 -0.4
41,864 + 12741 mRNA_4373 0.35 -0.1
41,870 + 12741 mRNA_4373 0.35 -0.1
41,937 + 12741 mRNA_4373 0.39 +0.7
42,116 + 12741 mRNA_4373 0.49 +2.5
42,232 + 12741 mRNA_4373 0.56 +0.5
42,540 + 12741 mRNA_4373 0.74 -0.1
42,735 + 12741 mRNA_4373 0.85 +0.3
42,790 + 12741 mRNA_4373 0.88 -1.7
42,864 + +0.3
42,973 + -1.1
43,033 + +0.7
43,033 + +0.5
43,160 + -0.6
43,162 - -0.8
43,311 + -0.5
43,322 - -1.2
43,373 - -0.4
43,382 + -0.3
43,425 + 12742 mRNA_4374 0.10 +0.5
43,437 + 12742 mRNA_4374 0.11 -0.4
43,541 - 12742 mRNA_4374 0.14 -0.6
43,542 - 12742 mRNA_4374 0.14 +0.2
43,720 + 12742 mRNA_4374 0.20 -1.5
43,871 + 12742 mRNA_4374 0.25 +1.1
43,896 - 12742 mRNA_4374 0.26 +0.2
43,905 - 12742 mRNA_4374 0.27 +1.1
43,943 - 12742 mRNA_4374 0.28 +0.5

Or see this region's nucleotide sequence