Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4458

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12825 and 12826 are separated by 285 nucleotides12826 and 12827 are separated by 327 nucleotides mRNA_4457: 12825 - K14709 SLC39A1_2_3, ZIP1_2_3 solute carrier family 39 (zinc transporter), member 1/2/3, at 231,158 to 232,825 12825 mRNA_4458: 12826 - K08762 DBI, ACBP diazepam-binding inhibitor (GABA receptor modulator, acyl-CoA-binding protein), at 233,111 to 233,901 12826 mRNA_4459: 12827 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729, at 234,229 to 236,969 12827

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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232,222 - 12825 mRNA_4457 0.64 -0.3
232,445 - 12825 mRNA_4457 0.77 -0.1
232,698 + -0.7
232,828 + +1.6
232,855 + +0.6
232,960 + +0.1
233,103 - -1.0
233,981 + -0.5
234,123 - +0.1
234,425 + -0.3
234,439 + -0.4
234,460 - +0.5
234,842 + 12827 mRNA_4459 0.22 +0.2
234,898 - 12827 mRNA_4459 0.24 +0.6

Or see this region's nucleotide sequence