Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4533

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12900 and 12901 are separated by 200 nucleotides12901 and 12902 are separated by 397 nucleotides mRNA_4532: 12900 - K01247 alkA DNA-3-methyladenine glycosylase II, at 396,525 to 397,973 12900 mRNA_4533: 12901 - Hypothetical Protein, at 398,174 to 399,920 12901 mRNA_4534: 12902 - K03457 TC.NCS1 nucleobase-cation symporter-1, NCS1 family, at 400,318 to 402,345 12902

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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397,232 - 12900 mRNA_4532 0.49 +0.2
397,492 + 12900 mRNA_4532 0.67 -0.4
397,505 + 12900 mRNA_4532 0.68 -0.8
397,760 - 12900 mRNA_4532 0.85 -0.1
398,361 - 12901 mRNA_4533 0.11 +0.7
398,489 - 12901 mRNA_4533 0.18 -0.4
398,655 - 12901 mRNA_4533 0.28 +0.0
398,703 - 12901 mRNA_4533 0.30 -0.8
398,770 + 12901 mRNA_4533 0.34 +0.7
399,123 + 12901 mRNA_4533 0.54 +0.3
399,261 + 12901 mRNA_4533 0.62 -0.4
399,440 + 12901 mRNA_4533 0.72 -2.1
399,690 + 12901 mRNA_4533 0.87 +0.1
399,849 + +0.3
399,852 + -0.4
399,996 + -0.3
400,010 - +0.9
400,033 - +0.4
400,173 + -1.5
400,783 + 12902 mRNA_4534 0.23 -1.7

Or see this region's nucleotide sequence