Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4562

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12929 and 12930 are separated by 495 nucleotides12930 and 12931 are separated by 551 nucleotides mRNA_4561: 12929 - K06990 MEMO1 MEMO1 family protein, at 464,488 to 466,003 12929 mRNA_4562: 12930 - K11366 USP22_27_51, UBP8 ubiquitin carboxyl-terminal hydrolase 22/27/51, at 466,499 to 468,748 12930 mRNA_4563: 12931 - KOG1601 GATA-4/5/6 transcription factors, at 469,300 to 472,637 12931

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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465,712 - 12929 mRNA_4561 0.81 +0.6
465,742 + 12929 mRNA_4561 0.83 -0.1
465,894 - -0.0
465,996 + -0.1
465,996 + -0.0
466,006 - -1.1
466,021 + +1.7
466,157 - -0.2
466,174 + -0.2
466,178 - +0.3
466,183 + -0.1
466,324 - -1.1
466,325 + +0.1
466,332 - +0.3
466,333 + +0.3
466,333 + -0.1
466,473 + +1.0
466,473 + -0.7
466,480 - +0.8
466,490 - -0.2
466,770 + 12930 mRNA_4562 0.12 +0.2
466,783 + 12930 mRNA_4562 0.13 -0.3
466,928 + 12930 mRNA_4562 0.19 -0.3
466,930 - 12930 mRNA_4562 0.19 +0.1
466,932 - 12930 mRNA_4562 0.19 +1.0
467,110 - 12930 mRNA_4562 0.27 -0.2
467,237 - 12930 mRNA_4562 0.33 -0.2
467,357 - 12930 mRNA_4562 0.38 -0.2
468,511 + 12930 mRNA_4562 0.89 +1.0
468,546 - -0.8
468,565 + +0.3
468,592 - -0.0
468,874 - -0.2
469,604 - +0.5

Or see this region's nucleotide sequence