Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4633

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13000 and 13001 are separated by 99 nucleotides mRNA_4632: 13000 - K13107 RBMX2, IST3 RNA-binding motif protein, X-linked 2, at 651,672 to 652,888 13000 mRNA_4633: 13001 - K00521 E1.16.1.7 ferric-chelate reductase, at 652,988 to 655,146 13001

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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652,278 + 13000 mRNA_4632 0.50 +0.4
652,295 + 13000 mRNA_4632 0.51 +0.2
653,307 - 13001 mRNA_4633 0.15 +0.7
653,314 + 13001 mRNA_4633 0.15 -1.1
654,001 - 13001 mRNA_4633 0.47 -1.2
654,024 + 13001 mRNA_4633 0.48 -0.2
654,070 + 13001 mRNA_4633 0.50 -1.3
654,315 + 13001 mRNA_4633 0.61 -0.8
654,583 + 13001 mRNA_4633 0.74 -1.0
654,762 - 13001 mRNA_4633 0.82 +0.1
654,899 - 13001 mRNA_4633 0.89 +0.6
655,050 + -0.5
655,067 - -0.3
655,177 - +0.5
655,184 - -0.2
655,195 + +0.2
655,337 - +0.3
655,344 - +0.3
655,359 + -0.2
655,364 - +0.9
655,364 - -0.4
655,367 + -0.1
655,367 - +0.1
655,370 + +0.5
655,401 + -0.4
655,404 + +0.9
655,408 - -0.3
655,408 + -0.2
655,411 - +1.6
655,436 - -0.6
655,444 + +0.2
655,454 - +1.0
655,457 + -0.8
655,466 + -0.7
655,467 - -0.0
655,474 - +0.9
655,481 - -0.6
655,483 + +0.7
655,483 - +0.4
655,484 - +0.0
655,486 - -0.1
655,518 - +1.6
655,519 + -2.8
655,525 + -1.5
655,538 - +0.5
655,569 + -0.7
655,571 - -0.0
655,588 - -0.9
655,589 + +0.1
655,589 + +0.0
655,594 + -0.4
655,599 + -0.8
655,602 + +1.0
655,603 + -0.9
655,604 + +0.1
655,605 + -0.3
655,607 - +0.1
655,613 - +0.7
655,616 + -0.1
655,616 - -0.3
655,631 + +0.1
655,632 - -0.3
655,633 - +0.4
655,639 + -0.0
655,641 - +0.0
655,645 + +0.0
655,647 + -0.1
655,655 + +0.9
655,661 - -0.2
655,662 + +0.7
655,668 - -0.8
655,806 - -0.2
655,808 + +1.4
655,809 - -0.6
655,812 + +0.2
655,819 - -0.8
655,830 - -0.5
655,831 + -0.1
655,963 + -0.3
656,091 + -0.7
656,107 + -0.4

Or see this region's nucleotide sequence