Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4664

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13031 and 13032 are separated by 326 nucleotides13032 and 13033 are separated by 194 nucleotides mRNA_4663: 13031 - K18619 CORO7 coronin-7, at 722,374 to 726,218 13031 mRNA_4664: 13032 - Hypothetical Protein, at 726,545 to 727,733 13032 mRNA_4665: 13033 - K02332 POLG1, MIP1 DNA polymerase gamma 1, at 727,928 to 732,665 13033

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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726,504 + -1.3
726,557 + -0.7
726,827 - 13032 mRNA_4664 0.24 +0.3
726,850 - 13032 mRNA_4664 0.26 +0.0
726,874 + 13032 mRNA_4664 0.28 +0.0
727,288 + 13032 mRNA_4664 0.62 +0.1
727,298 + 13032 mRNA_4664 0.63 -0.5
727,401 - 13032 mRNA_4664 0.72 +0.7
727,567 + 13032 mRNA_4664 0.86 -0.4
727,590 + 13032 mRNA_4664 0.88 -1.0
727,703 - +0.2
727,984 + +0.2
728,035 + +1.0

Or see this region's nucleotide sequence