Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4700

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13067 and 13068 are separated by 285 nucleotides13068 and 13069 are separated by 479 nucleotides mRNA_4699: 13067 - K09140 TSR3 pre-rRNA-processing protein TSR3, at 801,271 to 802,584 13067 mRNA_4700: 13068 - BLAST putative mannoprotein [Rhizoctonia solani 123E], at 802,870 to 804,709 13068 mRNA_4701: 13069 - HMMPfam-Asp/Glu/Hydantoin racemase-PF01177, at 805,189 to 806,290 13069

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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801,871 + 13067 mRNA_4699 0.46 +0.0
801,875 + 13067 mRNA_4699 0.46 -0.1
802,459 - +0.8
802,666 - +0.1
802,788 - -0.9
802,796 + -1.6
803,040 - -1.6
803,210 + 13068 mRNA_4700 0.18 +0.8
803,361 - 13068 mRNA_4700 0.27 +1.0
803,368 - 13068 mRNA_4700 0.27 -0.3
803,641 - 13068 mRNA_4700 0.42 +0.6
803,777 - 13068 mRNA_4700 0.49 -0.2
804,357 - 13068 mRNA_4700 0.81 -0.6
804,361 + 13068 mRNA_4700 0.81 -0.7
804,381 - 13068 mRNA_4700 0.82 -0.8
804,510 + 13068 mRNA_4700 0.89 -0.1
804,518 - 13068 mRNA_4700 0.90 +0.2
804,525 + 13068 mRNA_4700 0.90 +0.5
804,634 - -0.2
804,660 - -0.4
804,672 + +0.0
804,678 - +0.5
804,791 - -0.1
804,804 - -0.0
804,816 - -0.5
804,821 + +0.8
804,821 + -0.0
804,822 - -0.3
804,826 + -0.2
804,831 + -0.2
804,839 + +0.1
804,841 - -0.3
804,847 + -0.1
804,850 - +0.2
804,858 + +0.0
804,863 + +0.8
804,878 - -0.1
804,888 - -0.2
804,895 + +0.9
805,036 - +0.4
805,045 - +0.3
805,045 + -0.4
805,054 + +0.6
805,064 + -0.3
805,068 - +0.0
805,071 + -0.9
805,084 + -0.2
805,086 + -1.5
805,088 - -0.4
805,110 + +0.7
805,142 - -0.1
805,161 - -1.3
805,181 - +0.8
805,225 + +1.3
805,242 - +0.5
805,257 + +0.1
805,267 - +0.1
805,274 + +0.3
805,276 - -0.8
805,278 - +1.0
805,284 + +0.3
805,289 + +0.1
805,293 + -0.6
805,295 - +0.2
805,413 - 13069 mRNA_4701 0.20 -0.0
805,440 - 13069 mRNA_4701 0.23 +1.0

Or see this region's nucleotide sequence