Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4759

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13127 and 13128 are separated by 174 nucleotides mRNA_4759: 13127 - HMMPfam-Fungal cellulose binding domain-PF00734,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF57180, at 940,381 to 941,157 13127 mRNA_4760: 13128 - K08157 TPO1 MFS transporter, DHA1 family, multidrug resistance protein, at 941,332 to 944,070 13128

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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939,442 + -0.9
939,484 + -0.3
939,543 + -0.3
939,543 + +0.4
939,632 + +0.2
939,839 + -0.5
939,861 + -0.4
940,107 - -0.3
940,231 - -0.2
940,237 - +0.5
940,648 + 13127 mRNA_4759 0.34 -0.6
940,692 - 13127 mRNA_4759 0.40 +1.4
940,762 - 13127 mRNA_4759 0.49 -0.3
940,983 - 13127 mRNA_4759 0.77 +0.3
941,157 + -1.3
941,390 - -0.3
941,391 + +0.1
941,396 + -1.2
941,609 + 13128 mRNA_4760 0.10 +0.8
941,736 + 13128 mRNA_4760 0.15 +0.3
941,785 + 13128 mRNA_4760 0.17 -0.2
942,025 - 13128 mRNA_4760 0.25 +0.7
942,032 + 13128 mRNA_4760 0.26 -1.2

Or see this region's nucleotide sequence