Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4760

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13127 and 13128 are separated by 174 nucleotides13128 and 13129 are separated by 315 nucleotides mRNA_4759: 13127 - HMMPfam-Fungal cellulose binding domain-PF00734,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF57180, at 940,381 to 941,157 13127 mRNA_4760: 13128 - K08157 TPO1 MFS transporter, DHA1 family, multidrug resistance protein, at 941,332 to 944,070 13128 mRNA_4761: 13129 - K02735 PSMB3 20S proteasome subunit beta 3, at 944,386 to 945,694 13129

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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940,648 + 13127 mRNA_4759 0.34 -0.6
940,692 - 13127 mRNA_4759 0.40 +1.4
940,762 - 13127 mRNA_4759 0.49 -0.3
940,983 - 13127 mRNA_4759 0.77 +0.3
941,157 + -1.3
941,390 - -0.3
941,391 + +0.1
941,396 + -1.2
941,609 + 13128 mRNA_4760 0.10 +0.8
941,736 + 13128 mRNA_4760 0.15 +0.3
941,785 + 13128 mRNA_4760 0.17 -0.2
942,025 - 13128 mRNA_4760 0.25 +0.7
942,032 + 13128 mRNA_4760 0.26 -1.2
942,241 + 13128 mRNA_4760 0.33 -0.3
942,308 + 13128 mRNA_4760 0.36 -0.1
942,354 - 13128 mRNA_4760 0.37 +1.2
942,358 + 13128 mRNA_4760 0.37 +0.1
943,038 + 13128 mRNA_4760 0.62 +0.1
943,130 + 13128 mRNA_4760 0.66 -0.6
943,292 - 13128 mRNA_4760 0.72 -0.2
943,519 - 13128 mRNA_4760 0.80 -0.1
943,828 + -1.4
943,971 + +0.3
944,076 - +2.3
944,157 - +0.2
944,246 + -0.4
944,250 - -0.3
944,263 - +0.8
944,268 + +0.3
944,279 + -1.2
944,415 - +0.8
945,019 - 13129 mRNA_4761 0.48 +1.2

Or see this region's nucleotide sequence