Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4846

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13213 and 13214 are separated by 208 nucleotides13214 and 13215 are separated by 253 nucleotides mRNA_4845: 13213 - Hypothetical Protein, at 1,130,443 to 1,131,980 13213 mRNA_4846: 13214 - K03943 NDUFV2 NADH dehydrogenase (ubiquinone) flavoprotein 2, at 1,132,189 to 1,133,318 13214 mRNA_4847: 13215 - Hypothetical Protein, at 1,133,572 to 1,137,413 13215

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,131,457 - 13213 mRNA_4845 0.66 -0.3
1,131,813 - 13213 mRNA_4845 0.89 +0.8
1,131,910 - +0.6
1,131,915 - +2.6
1,133,344 - -0.2
1,133,353 + +0.6
1,133,379 - +0.8
1,133,450 + -0.8
1,133,454 - -0.9
1,133,507 + +2.2
1,133,509 - -0.0
1,133,510 + -0.0
1,133,643 + +0.4
1,133,670 + -0.9
1,133,784 - +0.8
1,133,800 + -0.3
1,133,814 - -0.5
1,133,847 - -0.4
1,134,076 - 13215 mRNA_4847 0.13 -0.9
1,134,087 + 13215 mRNA_4847 0.13 +0.0
1,134,285 - 13215 mRNA_4847 0.19 +0.0

Or see this region's nucleotide sequence