Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4897

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13265 and 13266 are separated by 370 nucleotides mRNA_4897: 13265 - K01759 GLO1, gloA lactoylglutathione lyase, at 1,252,541 to 1,253,295 13265 mRNA_4898: 13266 - HMMPfam-TAP-like protein-PF08386,SUPERFAMILY--SSF53474, at 1,253,666 to 1,256,190 13266

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,251,680 - +1.0
1,251,979 - -0.2
1,251,985 + -0.3
1,252,129 - -0.6
1,252,284 - -1.1
1,252,300 + -0.0
1,253,111 + 13265 mRNA_4897 0.75 +0.3
1,253,449 + +0.9
1,253,599 - +0.1
1,253,617 - +0.0
1,253,618 + +0.7
1,253,621 - -0.2
1,253,623 + +0.3
1,253,642 - +0.1
1,253,756 - +0.2
1,253,780 + +0.0
1,253,876 + -0.5
1,253,914 - +0.1
1,253,915 - +0.3
1,253,920 - 13266 mRNA_4898 0.10 -0.3
1,253,920 + 13266 mRNA_4898 0.10 -0.7
1,253,924 - 13266 mRNA_4898 0.10 +0.1
1,253,935 + 13266 mRNA_4898 0.11 +0.1

Or see this region's nucleotide sequence