Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4917

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13284 and 13285 are separated by 311 nucleotides13285 and 13286 are separated by 156 nucleotides mRNA_4916: 13284 - Hypothetical Protein, at 1,298,446 to 1,299,767 13284 mRNA_4917: 13285 - KOG2920 Predicted methyltransferase, at 1,300,079 to 1,301,093 13285 mRNA_4918: 13286 - K00327 POR NADPH-ferrihemoprotein reductase, at 1,301,250 to 1,303,860 13286

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,299,258 + 13284 mRNA_4916 0.61 -1.1
1,299,386 + 13284 mRNA_4916 0.71 +0.1
1,299,793 - -0.2
1,299,799 - +0.3
1,299,973 - -0.7
1,300,071 + +2.0
1,300,119 + -0.2
1,300,262 - 13285 mRNA_4917 0.18 +0.8
1,300,696 + 13285 mRNA_4917 0.61 +0.4
1,301,189 + -0.4

Or see this region's nucleotide sequence