Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4937

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13304 and 13305 are separated by 364 nucleotides13305 and 13306 are separated by 695 nucleotides mRNA_4936: 13304 - HMMPfam-MFS_1 like family-PF12832, at 1,359,714 to 1,362,398 13304 mRNA_4937: 13305 - HMMPfam-Single-strand binding protein family-PF00436,ProSiteProfiles-Single-strand binding (SSB) domain profile.-PS50935,SUPERFAMILY--SSF50249, at 1,362,763 to 1,363,546 13305 mRNA_4938: 13306 - HMMPfam-Protein of unknown function (DUF1749)-PF08538,SUPERFAMILY--SSF53474, at 1,364,242 to 1,365,196 13306

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,361,851 + 13304 mRNA_4936 0.80 +0.0
1,361,890 + 13304 mRNA_4936 0.81 -0.5
1,362,019 - 13304 mRNA_4936 0.86 +0.3
1,362,033 + 13304 mRNA_4936 0.86 -0.5
1,362,109 - 13304 mRNA_4936 0.89 -1.8
1,362,150 + -0.0
1,362,184 - +0.1
1,362,208 - -0.2
1,362,323 - -0.5
1,362,340 + +0.1
1,362,347 - -0.0
1,362,477 + +0.6
1,362,477 - +0.6
1,362,640 - -0.5
1,362,755 + -0.5
1,363,482 - +0.4
1,363,613 + -0.2
1,363,768 - +0.1
1,363,785 - -0.0
1,363,787 + -0.1
1,363,788 - -0.1
1,363,792 - -1.0
1,363,795 + +0.9
1,363,797 - +0.4
1,363,797 - +0.1
1,363,805 - -0.8
1,363,806 - +0.1
1,364,222 + +0.5
1,364,230 + -0.2
1,364,390 + 13306 mRNA_4938 0.15 +1.0

Or see this region's nucleotide sequence