Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4959

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13326 and 13327 are separated by 418 nucleotides13327 and 13328 are separated by 508 nucleotides mRNA_4958: 13326 - K02519 infB, MTIF2 translation initiation factor IF-2, at 1,402,816 to 1,406,002 13326 mRNA_4959: 13327 - K08269 ULK1_2_3, ATG1 serine/threonine-protein kinase ULK/ATG1, at 1,406,421 to 1,410,214 13327 mRNA_4960: 13328 - K00102 dld, LDHD D-lactate dehydrogenase (cytochrome), at 1,410,723 to 1,413,349 13328

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,406,432 - +0.1
1,407,115 + 13327 mRNA_4959 0.18 -0.8
1,407,115 + 13327 mRNA_4959 0.18 +0.2
1,407,382 + 13327 mRNA_4959 0.25 -0.3
1,407,717 + 13327 mRNA_4959 0.34 +0.5
1,407,825 + 13327 mRNA_4959 0.37 -0.3
1,408,428 + 13327 mRNA_4959 0.53 -1.8
1,408,552 + 13327 mRNA_4959 0.56 -0.4
1,408,731 + 13327 mRNA_4959 0.61 -0.4
1,408,851 + 13327 mRNA_4959 0.64 +0.2
1,409,167 - 13327 mRNA_4959 0.72 -0.4
1,409,273 + 13327 mRNA_4959 0.75 +0.6
1,409,394 - 13327 mRNA_4959 0.78 +0.5
1,409,397 - 13327 mRNA_4959 0.78 +1.1
1,409,404 + 13327 mRNA_4959 0.79 -1.3
1,409,498 - 13327 mRNA_4959 0.81 +0.1
1,409,715 + 13327 mRNA_4959 0.87 -1.7
1,409,756 + 13327 mRNA_4959 0.88 +0.2
1,409,863 - -1.1
1,409,865 - -0.7
1,409,881 - -0.8
1,410,003 + -0.7
1,410,144 - +0.5
1,410,144 - +0.1
1,410,147 + -0.0
1,410,184 + +0.5
1,410,186 + -0.3
1,410,214 + +1.0
1,410,285 - +0.7
1,410,325 + -0.4
1,410,326 - -0.5
1,410,333 - +0.5
1,410,337 + -1.1
1,410,408 + -0.1
1,410,446 + -0.4
1,410,464 - +0.7
1,410,464 + +0.9
1,410,465 + +0.3
1,410,469 + +0.0
1,410,472 - +0.5
1,410,508 + +0.8
1,410,627 - +0.3
1,410,635 + +0.6
1,410,642 - -0.8
1,410,782 - +0.8
1,410,790 + +0.2
1,410,795 + +0.4
1,410,902 - -0.3
1,410,906 + -0.5
1,410,917 + -0.7
1,410,918 + +0.6
1,411,048 - 13328 mRNA_4960 0.12 -0.0

Or see this region's nucleotide sequence