Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5029

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13396 and 13397 are separated by 683 nucleotides13397 and 13398 are separated by 103 nucleotides mRNA_5028: 13396 - HMMPfam-Cryptococcal mannosyltransferase 1-PF11735, at 1,588,413 to 1,590,373 13396 mRNA_5029: 13397 - HMMPfam-Ornithine decarboxylase antizyme-PF02100,SUPERFAMILY--SSF55729, at 1,591,057 to 1,592,630 13397 mRNA_5030: 13398 - K01889 FARSA, pheS phenylalanyl-tRNA synthetase alpha chain, at 1,592,734 to 1,594,516 13398

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,590,185 + +1.2
1,590,630 - -0.4
1,590,767 - -0.9
1,590,958 - +0.3
1,591,216 + 13397 mRNA_5029 0.10 +0.4
1,591,398 + 13397 mRNA_5029 0.22 -0.3
1,591,645 - 13397 mRNA_5029 0.37 +0.9
1,591,783 - 13397 mRNA_5029 0.46 +0.6
1,591,797 - 13397 mRNA_5029 0.47 +0.3
1,591,802 + 13397 mRNA_5029 0.47 -2.0
1,591,803 - 13397 mRNA_5029 0.47 +1.3
1,591,811 + 13397 mRNA_5029 0.48 -0.8
1,591,931 - 13397 mRNA_5029 0.56 +0.7
1,591,954 + 13397 mRNA_5029 0.57 +0.1
1,592,064 - 13397 mRNA_5029 0.64 +0.4
1,592,080 - 13397 mRNA_5029 0.65 +1.9
1,592,086 - 13397 mRNA_5029 0.65 -0.5
1,592,098 + 13397 mRNA_5029 0.66 -0.0
1,592,099 + 13397 mRNA_5029 0.66 -0.9
1,592,104 + 13397 mRNA_5029 0.67 +0.1
1,592,110 - 13397 mRNA_5029 0.67 +0.5
1,592,113 - 13397 mRNA_5029 0.67 -0.9
1,592,114 - 13397 mRNA_5029 0.67 +0.3
1,592,122 - 13397 mRNA_5029 0.68 +0.4
1,592,234 - 13397 mRNA_5029 0.75 -0.4
1,592,236 - 13397 mRNA_5029 0.75 -0.1
1,592,253 + 13397 mRNA_5029 0.76 -0.1
1,592,253 - 13397 mRNA_5029 0.76 +1.4
1,592,259 - 13397 mRNA_5029 0.76 -0.7
1,592,259 - 13397 mRNA_5029 0.76 +0.3
1,592,261 - 13397 mRNA_5029 0.76 -0.5
1,592,262 + 13397 mRNA_5029 0.77 +0.1
1,592,392 - 13397 mRNA_5029 0.85 +1.7
1,592,393 + 13397 mRNA_5029 0.85 -0.3
1,592,401 + 13397 mRNA_5029 0.85 -0.2
1,592,407 + 13397 mRNA_5029 0.86 -0.5
1,592,409 - 13397 mRNA_5029 0.86 -0.2
1,592,410 - 13397 mRNA_5029 0.86 +0.3
1,592,410 - 13397 mRNA_5029 0.86 +0.7
1,592,412 - 13397 mRNA_5029 0.86 +0.3
1,592,556 - -0.0
1,592,557 - +0.6
1,592,566 - +0.8
1,592,578 - -0.4
1,592,680 - -0.6
1,592,695 - -0.2
1,592,697 + +0.7
1,592,709 - +2.0
1,592,716 - -0.2
1,592,718 - +0.1
1,592,727 + -1.3
1,592,732 + +1.1

Or see this region's nucleotide sequence