Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5056

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13423 and 13424 are separated by 817 nucleotides13424 and 13425 are separated by 782 nucleotides mRNA_5055: 13423 - KOG1289 Amino acid transporters, at 1,642,260 to 1,644,737 13423 mRNA_5056: 13424 - K02137 ATPeF0O, ATP5O, ATP5 F-type H+-transporting ATPase subunit O, at 1,645,555 to 1,646,643 13424 mRNA_5057: 13425 - K03252 EIF3C translation initiation factor 3 subunit C, at 1,647,426 to 1,650,006 13425

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,644,697 + +0.1
1,644,715 + +0.0
1,644,872 + +0.8
1,644,887 + +0.4
1,644,890 - +1.4
1,644,899 - +0.5
1,644,909 + -1.2
1,644,913 + -0.4
1,644,917 + +1.3
1,644,918 + +0.6
1,644,919 - +0.3
1,644,927 + +0.1
1,644,928 + -0.9
1,644,934 + +0.3
1,644,963 - +0.1
1,645,143 - -0.8
1,645,230 - -1.0
1,645,236 - +0.3
1,645,242 - -0.2
1,645,270 + -0.8
1,645,275 + -0.4
1,645,280 - -0.2
1,645,291 + +1.3
1,645,302 - -0.6
1,645,334 + -0.3
1,645,373 + -0.1
1,645,478 - -0.3
1,645,516 - -0.1
1,646,537 - -0.9
1,646,684 - +0.3
1,646,694 - -0.9
1,646,722 - +0.5
1,646,728 - -1.3
1,646,732 - -0.4

Or see this region's nucleotide sequence