Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5073

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13441 and 13442 are separated by 209 nucleotides mRNA_5073: 13441 - K12843 PRPF3, PRP3 U4/U6 small nuclear ribonucleoprotein PRP3, at 1,684,335 to 1,686,538 13441 mRNA_5074: 13442 - KOG1426 FOG RCC1 domain, at 1,686,748 to 1,688,020 13442

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,683,535 + +0.5
1,683,683 + +1.0
1,684,049 - +0.3
1,684,120 + -0.1
1,684,277 + -0.5
1,684,363 - -0.7
1,686,588 + -0.2
1,686,677 - +0.1
1,686,686 + -0.7
1,686,950 - 13442 mRNA_5074 0.16 -1.4
1,686,969 + 13442 mRNA_5074 0.17 +0.1
1,687,136 + 13442 mRNA_5074 0.30 -0.0
1,687,137 - 13442 mRNA_5074 0.31 +0.2
1,687,248 + 13442 mRNA_5074 0.39 +0.1
1,687,408 + 13442 mRNA_5074 0.52 -0.1

Or see this region's nucleotide sequence