Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5074

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13441 and 13442 are separated by 209 nucleotides13442 and 13443 are separated by 195 nucleotides mRNA_5073: 13441 - K12843 PRPF3, PRP3 U4/U6 small nuclear ribonucleoprotein PRP3, at 1,684,335 to 1,686,538 13441 mRNA_5074: 13442 - KOG1426 FOG RCC1 domain, at 1,686,748 to 1,688,020 13442 mRNA_5075: 13443 - K00958 sat, met3 sulfate adenylyltransferase, at 1,688,216 to 1,690,274 13443

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,686,588 + -0.2
1,686,677 - +0.1
1,686,686 + -0.7
1,686,950 - 13442 mRNA_5074 0.16 -1.4
1,686,969 + 13442 mRNA_5074 0.17 +0.1
1,687,136 + 13442 mRNA_5074 0.30 -0.0
1,687,137 - 13442 mRNA_5074 0.31 +0.2
1,687,248 + 13442 mRNA_5074 0.39 +0.1
1,687,408 + 13442 mRNA_5074 0.52 -0.1
1,687,682 + 13442 mRNA_5074 0.73 -0.7
1,687,906 - -1.0
1,688,152 + -0.1
1,688,275 - +0.2
1,688,697 - 13443 mRNA_5075 0.23 -0.5
1,688,703 + 13443 mRNA_5075 0.24 +0.2
1,688,832 - 13443 mRNA_5075 0.30 -1.7
1,688,936 - 13443 mRNA_5075 0.35 -0.2

Or see this region's nucleotide sequence