Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5086

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13453 and 13454 are separated by 445 nucleotides13454 and 13455 are separated by 584 nucleotides mRNA_5085: 13453 - K03114 SWE1 mitosis inhibitor protein kinase SWE1, at 1,713,575 to 1,718,453 13453 mRNA_5086: 13454 - Hypothetical Protein, at 1,718,899 to 1,719,393 13454 mRNA_5087: 13455 - K06890 K06890 uncharacterized protein, at 1,719,978 to 1,721,212 13455

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,718,124 - -0.2
1,718,132 + -1.4
1,718,133 - -0.5
1,718,273 - +0.0
1,718,601 + -0.2
1,718,744 + +0.4
1,718,755 - -0.9
1,718,763 + +0.4
1,718,763 + -1.3
1,718,773 + +0.8
1,718,787 + -0.5
1,718,808 + +1.1
1,718,828 + +1.2
1,718,941 + +0.8
1,719,043 - 13454 mRNA_5086 0.29 +0.5
1,719,654 + +0.2
1,719,663 + +0.4
1,719,680 + -0.8
1,719,780 - +0.4
1,719,794 + -0.1
1,719,813 + +0.4
1,719,838 + +0.0
1,719,850 - +0.1
1,719,938 - -0.6
1,720,079 + +0.7
1,720,247 + 13455 mRNA_5087 0.22 -0.0
1,720,259 + 13455 mRNA_5087 0.23 -0.6

Or see this region's nucleotide sequence