Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5172

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_5172: 13540 - BLAST similar to An11g07040 [Aspergillus kawachii IFO 4308], at 70,106 to 71,183 13540

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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69,193 - -1.3
69,193 - -0.5
69,200 + -1.9
69,208 - -1.2
69,327 - +0.2
69,331 - -3.0
69,333 - +0.3
69,337 - -1.5
69,338 + -0.2
69,351 + -1.7
69,355 + -3.1
69,462 - -0.5
69,476 + +0.0
69,499 + -0.6
69,500 - -0.9
69,502 + +0.6
69,503 - +0.5
69,511 + +0.3
69,519 + -0.1
69,643 - -0.7
69,643 + +0.4
69,643 + -2.6
69,645 + +0.5
69,646 - +1.1
69,650 - -0.5
69,652 + +0.1
69,652 + -0.6
69,653 + -0.3
69,653 + +0.1
69,656 + +0.9
69,676 + +0.6
69,690 + -0.2
69,694 + -0.1
69,696 + -0.0
69,698 - -0.9
69,710 - -0.4
69,730 - +0.7
69,732 + +0.4
69,734 + -0.2
69,737 - +0.5
69,742 + +1.0
69,746 + +1.0
69,749 + +0.8
69,761 + +1.1
69,762 + -0.9
69,770 - +1.3
69,779 - +2.2
69,782 + -1.1
69,788 + -0.1
69,840 - +0.8
69,853 - -1.2
69,864 + -0.1
70,124 + -0.6
70,141 + +0.4
70,147 - -1.2
70,148 + +0.2
70,161 + -0.5
70,163 - +0.0
70,164 + -0.0
70,274 - 13540 mRNA_5172 0.16 -0.1
70,278 - 13540 mRNA_5172 0.16 +0.1
70,323 - 13540 mRNA_5172 0.20 +0.1
70,427 - 13540 mRNA_5172 0.30 -0.3
70,457 - 13540 mRNA_5172 0.33 +0.8
70,508 + 13540 mRNA_5172 0.37 -0.3
70,550 + 13540 mRNA_5172 0.41 +0.2
70,551 - 13540 mRNA_5172 0.41 -0.6
70,554 + 13540 mRNA_5172 0.42 -0.7
70,558 - 13540 mRNA_5172 0.42 +1.2
70,603 - 13540 mRNA_5172 0.46 -0.2
70,621 - 13540 mRNA_5172 0.48 -0.0
70,621 - 13540 mRNA_5172 0.48 -0.4
70,687 - 13540 mRNA_5172 0.54 +0.1
70,702 - 13540 mRNA_5172 0.55 -0.9
70,709 + 13540 mRNA_5172 0.56 +0.4
70,762 - 13540 mRNA_5172 0.61 -1.5
70,797 + 13540 mRNA_5172 0.64 -0.3
70,811 + 13540 mRNA_5172 0.65 +0.2
70,825 - 13540 mRNA_5172 0.67 +0.1
70,831 + 13540 mRNA_5172 0.67 -0.1
70,842 - 13540 mRNA_5172 0.68 +0.0
70,863 + 13540 mRNA_5172 0.70 -0.5
70,863 - 13540 mRNA_5172 0.70 +0.8
70,863 + 13540 mRNA_5172 0.70 -0.7
70,872 - 13540 mRNA_5172 0.71 +0.0
70,876 - 13540 mRNA_5172 0.71 +1.7
70,876 + 13540 mRNA_5172 0.71 -1.7
70,877 + 13540 mRNA_5172 0.72 -1.1
70,880 + 13540 mRNA_5172 0.72 +0.1
70,887 + 13540 mRNA_5172 0.72 -1.1
70,890 - 13540 mRNA_5172 0.73 -0.4
70,894 - 13540 mRNA_5172 0.73 -1.5
70,895 + 13540 mRNA_5172 0.73 +0.5
70,896 - 13540 mRNA_5172 0.73 -0.2
70,896 - 13540 mRNA_5172 0.73 -0.1
70,898 + 13540 mRNA_5172 0.73 -0.4
70,919 - 13540 mRNA_5172 0.75 +0.3
70,928 + 13540 mRNA_5172 0.76 -0.1
70,932 + 13540 mRNA_5172 0.77 -0.0
70,935 + 13540 mRNA_5172 0.77 -1.7
70,941 - 13540 mRNA_5172 0.77 -1.5
70,954 + 13540 mRNA_5172 0.79 -0.0
70,993 - 13540 mRNA_5172 0.82 -0.3
70,997 - 13540 mRNA_5172 0.83 -0.7
71,023 + 13540 mRNA_5172 0.85 -2.2
71,024 + 13540 mRNA_5172 0.85 +0.2
71,038 + 13540 mRNA_5172 0.86 +0.4
71,042 + 13540 mRNA_5172 0.87 +0.3
71,042 + 13540 mRNA_5172 0.87 -0.7
71,048 - 13540 mRNA_5172 0.87 -0.9
71,065 + 13540 mRNA_5172 0.89 +0.0
71,074 + 13540 mRNA_5172 0.90 +0.3
71,121 - -0.5
71,166 + +0.3
71,171 + +0.4
71,172 + +2.1
71,205 - -0.2
71,291 - +0.8
71,304 - -0.9
71,306 + +1.0
71,308 - +0.8
71,309 + -1.5
71,310 + +0.1
71,312 - +0.4
71,316 + -0.6
71,317 + +0.6
71,318 + -0.7
71,319 + -0.5
71,320 + -0.0
71,321 - -0.1
71,322 - -0.3
71,322 + +0.9
71,327 + +0.4
71,327 - -0.4
71,330 - -0.0
71,332 - +0.1
71,337 + +0.0
71,338 - +0.0
71,338 + -0.7
71,338 + +0.2
71,342 + -0.1
71,343 - -0.3
71,345 - +0.6
71,346 + +0.2
71,347 + +0.4
71,347 + -0.6
71,348 - -0.0
71,348 + -0.9
71,349 - -0.5
71,350 + +0.0
71,350 - +0.6
71,351 - -1.2
71,352 + -0.3
71,352 + +0.6
71,352 + -0.4
71,354 + -2.7
71,355 - -2.3
71,355 - -0.2
71,360 - +0.7
71,363 + -0.8
71,365 + -0.5
71,367 + -0.1
71,367 + +0.8
71,368 - +0.1
71,369 + -0.4
71,369 + -0.0
71,371 + -0.8
71,372 + +0.6
71,374 - +0.8
71,374 - -1.5
71,396 - +0.2
71,397 + +0.4
71,405 - +0.0
71,410 + -0.1
71,413 + -0.9
71,414 + +0.6
71,414 - -0.6
71,416 - -1.3
71,417 + -0.8
71,418 - -0.2
71,419 - -0.1
71,422 + -0.2
71,430 + -0.4
71,430 + +0.7
71,432 + +0.1
71,432 - -0.1
71,433 - -0.1
71,435 - +1.6
71,435 - +1.4
71,435 + +0.2
71,436 - +0.4
71,436 - -0.1
71,436 + -1.1
71,441 + +1.2
71,441 + +0.6
71,443 - -0.6
71,444 + +0.8
71,450 + -0.1
71,451 + +0.2
71,451 + -0.6
71,452 - +0.3
71,452 + -0.0
71,452 + -0.3
71,456 + -0.6
71,458 + -0.3
71,459 - +1.6
71,463 - +0.4
71,465 - -0.4
71,473 - +1.1
71,482 - -1.5
71,504 + +0.3
71,513 - -1.9
71,530 - +0.2
71,531 - +1.1
71,534 - +0.1
71,543 + -0.2
71,544 - -0.1
71,544 - +0.6
71,559 - -0.3
71,560 - -0.7
71,560 - -0.3
71,568 + +1.4
71,574 + +0.5
71,575 - -0.0
71,577 - -0.4
71,581 + +1.4
71,585 - +0.7
71,594 + -0.5
71,604 + +0.3
71,604 - -0.3
71,634 + -0.1
71,634 - +0.5
71,636 + -2.3
71,640 - +0.3
71,678 - -0.4
71,699 + +0.7
71,706 + -0.5
71,727 - -0.2
71,727 - -0.8
71,731 + -0.2
71,731 + -0.9
71,732 + +0.6
71,735 + -0.9
71,736 + -1.0
71,740 + -1.4
71,741 - +0.8
71,744 + -0.5
71,745 + +0.2
71,751 + -0.2
71,751 - -1.3
71,752 - +0.1
71,757 - -0.4
71,762 - -0.1
71,764 + +0.0
71,771 - +0.0
71,774 - +0.9
71,775 - -0.2
71,776 + +0.1
71,782 - +2.1
71,783 - -0.5
71,789 + +0.4
71,790 - -0.8
71,793 + -0.3
71,797 - +0.6
71,797 + -0.2
71,797 + -0.1
71,798 + +0.2
71,803 - +0.2
71,804 - -0.4
71,805 + -1.0
71,829 + +0.2
71,837 - -0.3
71,837 + -1.0
71,849 + -2.1
71,852 + +0.9
71,853 - -0.5
71,862 + +0.9
71,862 + -0.2
71,863 - +0.6
71,865 + -0.4
71,866 + -0.0
71,868 + +0.0
71,868 + -1.0
71,869 - -0.6
71,877 - -0.6
71,962 - +0.2
71,965 - +0.2
71,990 - +0.2
71,995 + -0.5
72,003 + -0.0
72,006 + -0.3
72,012 - +0.6
72,013 - +0.5
72,014 - +0.1
72,028 + +0.7
72,035 - -0.4
72,146 - -0.2
72,146 - -0.6
72,146 - -0.3
72,150 - -1.6
72,163 + -0.3

Or see this region's nucleotide sequence