Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5233

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13600 and 13601 are separated by 968 nucleotides13601 and 13602 are separated by 758 nucleotides mRNA_5232: 13600 - SUPERFAMILY--SSF52047, at 218,691 to 220,745 13600 mRNA_5233: 13601 - HMMPfam-Transmembrane amino acid transporter protein-PF01490, at 221,714 to 224,141 13601 mRNA_5234: 13602 - KOG0725 Reductases with broad range of substrate specificities, at 224,900 to 226,337 13602

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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220,761 + -0.2
220,803 + -0.0
220,809 + -1.1
220,811 - +0.5
220,937 - -1.1
220,942 - +0.1
220,948 + +0.1
220,965 - -0.3
220,965 + +0.6
220,991 + +0.7
220,993 - -0.3
221,027 + +0.7
221,043 - +0.8
221,044 + -0.4
221,062 - -0.5
221,062 - +1.0
221,064 - -1.0
221,072 - -0.1
221,075 - +0.8
221,081 - +0.8
221,094 + -0.4
221,100 - -0.7
221,101 + -1.3
221,102 - +1.4
221,103 + +1.2
221,105 + +0.5
221,106 - +2.3
221,107 + +0.5
221,123 + +0.3
221,136 + +0.1
221,145 - +1.4
221,146 + +0.7
221,152 + -1.1
221,171 + +0.7
221,179 + +1.9
221,191 - +0.2
221,203 - -0.2
221,204 - -0.2
221,217 + -1.3
221,217 - -1.0
221,219 - -0.4
221,249 + +0.1
221,253 - +0.6
221,253 - -0.2
221,295 + +0.4
221,310 - +0.1
221,318 + +0.6
221,350 + -0.0
221,362 + +0.1
221,368 - +0.2
221,370 + -0.7
221,380 + +0.8
221,381 + -0.3
221,396 + +0.6
221,398 - +0.1
221,398 + +1.9
221,405 + +0.3
221,405 + -0.4
221,411 - -1.1
221,411 + +0.5
221,411 - +0.0
221,412 - +0.3
221,415 + -0.1
221,419 + +0.2
221,419 + +0.4
221,431 + -0.6
221,460 + +0.3
221,465 - +0.3
221,477 - -0.4
221,501 + -0.6
221,508 - -0.7
221,530 + +0.5
221,535 - +0.2
221,535 + +0.5
221,540 - +0.0
221,540 + +0.2
221,540 + +0.4
221,547 + -0.2
221,548 + -0.7
221,552 - -0.3
221,552 + -1.3
221,555 - -0.4
221,555 - +0.7
221,558 + -1.0
221,683 + -0.4
221,707 + +0.0
221,710 + -0.3
221,747 - -0.6
221,805 - +0.4
221,838 - -0.3
221,843 + -0.3
221,850 - +0.3
221,948 - +0.9
222,601 - 13601 mRNA_5233 0.37 +1.1
222,723 - 13601 mRNA_5233 0.42 +0.6
222,877 - 13601 mRNA_5233 0.48 -0.6
223,488 + 13601 mRNA_5233 0.73 +0.5
224,559 - -1.1
224,588 - +0.1
224,730 - -0.2
224,754 - +0.6
224,768 - -0.1
224,771 + -0.8
224,812 - +1.9
224,904 + +0.5
225,024 + +0.0
225,038 + +0.1
225,102 + 13602 mRNA_5234 0.14 +0.5

Or see this region's nucleotide sequence