Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5267

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13634 and 13635 are separated by 681 nucleotides13635 and 13636 are separated by 748 nucleotides mRNA_5266: 13634 - K03262 EIF5 translation initiation factor 5, at 315,096 to 316,635 13634 mRNA_5267: 13635 - KOG2504 Monocarboxylate transporter, at 317,317 to 318,833 13635 mRNA_5268: 13636 - K10389 TUBG tubulin gamma, at 319,582 to 321,853 13636

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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316,692 + -0.6
316,715 + -0.6
316,861 - -0.3
317,009 - -0.5
317,010 - +2.2
317,012 + +1.7
317,433 + +0.4
317,631 - 13635 mRNA_5267 0.21 -0.8
317,672 + 13635 mRNA_5267 0.23 -0.0
317,933 - 13635 mRNA_5267 0.41 -0.0
318,084 - 13635 mRNA_5267 0.51 +0.2
318,209 + 13635 mRNA_5267 0.59 -0.6
318,338 - 13635 mRNA_5267 0.67 +0.7
318,340 - 13635 mRNA_5267 0.67 +0.3
318,474 - 13635 mRNA_5267 0.76 +0.2
318,623 - 13635 mRNA_5267 0.86 +1.5
319,222 - -0.7
319,233 + +1.5
319,372 + -0.4
319,377 + -0.0
319,383 + -0.7
319,510 - -0.0
319,517 + -1.0
319,518 + +0.2
319,518 - -0.1

Or see this region's nucleotide sequence