Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5307

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13674 and 13675 are separated by 158 nucleotides13675 and 13676 are separated by 116 nucleotides mRNA_5306: 13674 - BLAST PQ-loop repeat protein [Colletotrichum tofieldiae], at 417,031 to 419,663 13674 mRNA_5307: 13675 - KOG3769 Ribonuclease III domain proteins, at 419,822 to 421,852 13675 mRNA_5308: 13676 - Hypothetical Protein, at 421,969 to 422,926 13676

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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418,843 - 13674 mRNA_5306 0.69 +1.3
418,867 + 13674 mRNA_5306 0.70 +1.3
418,984 + 13674 mRNA_5306 0.74 +0.4
419,011 - 13674 mRNA_5306 0.75 -1.3
419,131 + 13674 mRNA_5306 0.80 -0.7
419,144 - 13674 mRNA_5306 0.80 -0.3
419,164 - 13674 mRNA_5306 0.81 +1.3
419,167 - 13674 mRNA_5306 0.81 +0.3
419,306 - 13674 mRNA_5306 0.86 -0.8
419,571 + +1.4
419,685 + -0.6
421,911 - +1.0
421,918 + -0.4
421,923 - +0.9
421,933 + -0.3
421,934 + +0.7
421,940 - -0.7
421,943 + +0.8
422,063 + -0.4
422,066 + 13676 mRNA_5308 0.10 -0.2
422,071 - 13676 mRNA_5308 0.11 -0.4
422,071 - 13676 mRNA_5308 0.11 -0.3
422,077 - 13676 mRNA_5308 0.11 -0.0
422,079 - 13676 mRNA_5308 0.11 -0.9
422,105 - 13676 mRNA_5308 0.14 -0.8
422,240 + 13676 mRNA_5308 0.28 +0.5
422,242 + 13676 mRNA_5308 0.28 -0.1
422,275 + 13676 mRNA_5308 0.32 +0.2
422,520 + 13676 mRNA_5308 0.58 +0.8
422,761 - 13676 mRNA_5308 0.83 -0.3

Or see this region's nucleotide sequence