Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5354

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13722 and 13723 are separated by 240 nucleotides mRNA_5354: 13722 - KOG0557 Dihydrolipoamide acetyltransferase, at 527,210 to 528,729 13722 mRNA_5355: 13723 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 528,970 to 530,546 13723

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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526,243 + +1.3
526,251 - +0.2
526,285 - +0.3
526,439 + +3.0
526,973 - -0.8
526,978 - +0.5
527,080 - -0.4
527,122 - -0.2
527,125 + +1.1
527,128 - -0.6
527,143 + -1.1
527,159 - -1.1
527,429 + 13722 mRNA_5354 0.14 +0.1
528,000 + 13722 mRNA_5354 0.52 +0.7
528,752 + -0.0
528,869 + -0.2
529,164 - 13723 mRNA_5355 0.12 +0.4
529,225 + 13723 mRNA_5355 0.16 +0.4
529,473 - 13723 mRNA_5355 0.32 +0.8
529,633 - 13723 mRNA_5355 0.42 +0.6

Or see this region's nucleotide sequence