Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5415

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_5415: 13783 - HMMPfam-Tyrosyl-DNA phosphodiesterase-PF06087,SUPERFAMILY--SSF56024, at 48,943 to 50,652 13783

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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48,073 + +1.0
48,165 - +1.1
48,654 - +0.9
48,833 - +0.4
49,268 - 13783 mRNA_5415 0.19 -0.8
49,277 - 13783 mRNA_5415 0.20 -0.0
49,284 + 13783 mRNA_5415 0.20 -0.0
49,500 + 13783 mRNA_5415 0.33 +1.1
49,530 - 13783 mRNA_5415 0.34 +0.5
49,674 - 13783 mRNA_5415 0.43 -2.1
49,763 - 13783 mRNA_5415 0.48 -0.2
49,763 - 13783 mRNA_5415 0.48 -0.2
50,181 - 13783 mRNA_5415 0.72 +0.2
50,358 - 13783 mRNA_5415 0.83 -0.0
50,442 - 13783 mRNA_5415 0.88 +0.1
50,461 + 13783 mRNA_5415 0.89 +0.4
50,568 - +2.3
50,587 + -0.0
50,626 + +0.1
50,753 + -0.0
50,753 + -2.8
50,771 + -1.1
50,773 + +0.3
50,774 - -1.1
50,775 - -1.3
50,894 - -0.3
50,897 - -0.2
50,901 - +0.4
50,908 + -1.3
50,924 + +0.0

Or see this region's nucleotide sequence