Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5468

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13835 and 13836 are separated by 5 nucleotides13836 and 13837 are separated by 104 nucleotides mRNA_5467: 13835 - KOG4391 Predicted alpha/beta hydrolase BEM46, at 165,116 to 166,451 13835 mRNA_5468: 13836 - Hypothetical Protein, at 166,457 to 167,011 13836 mRNA_5469: 13837 - HMMPfam-Bacteriorhodopsin-like protein-PF01036,PRINTS-Bacterial opsin signature-PR00251,ProSitePatterns-Bacterial rhodopsins retinal binding site.-PS00327,ProSitePatterns-Bacterial rhodopsins signature 1.-PS00950,SMART-Bacteriorhodopsin-like protein-SM01021,SUPERFAMILY--SSF81321, at 167,116 to 168,617 13837

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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165,568 + 13835 mRNA_5467 0.34 +1.1
165,636 - 13835 mRNA_5467 0.39 +0.3
166,171 + 13835 mRNA_5467 0.79 -0.7
166,381 + -0.6
166,642 - 13836 mRNA_5468 0.33 +0.4
166,650 + 13836 mRNA_5468 0.35 -0.9
166,749 + 13836 mRNA_5468 0.53 +0.4
166,754 + 13836 mRNA_5468 0.54 -0.1
166,772 - 13836 mRNA_5468 0.57 -0.1
166,783 - 13836 mRNA_5468 0.59 +0.9
166,939 + 13836 mRNA_5468 0.87 -0.6
167,478 + 13837 mRNA_5469 0.24 +0.1
167,978 + 13837 mRNA_5469 0.57 +1.3

Or see this region's nucleotide sequence