Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5474

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13841 and 13842 are separated by 278 nucleotides13842 and 13843 are separated by 158 nucleotides mRNA_5473: 13841 - KOG2226 Proteins containing regions of low-complexity, at 176,927 to 180,681 13841 mRNA_5474: 13842 - HMMPfam-Mitochondrial ATP synthase epsilon chain-PF04627,SUPERFAMILY--SSF48690, at 180,960 to 181,593 13842 mRNA_5475: 13843 - KOG0084 GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins, at 181,752 to 183,361 13843

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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180,173 - 13841 mRNA_5473 0.86 +0.3
180,211 + 13841 mRNA_5473 0.87 +1.4
180,491 - +0.6
180,638 - +0.0
180,907 + -2.1
180,907 + -3.3
180,910 - +0.0
180,911 + -3.2
180,911 + -3.2
180,914 - +0.6
180,914 - +0.6
180,921 + -0.3
181,754 + -1.1
181,758 + +0.5
181,824 + +0.1
181,912 + -0.3
181,941 - 13843 mRNA_5475 0.12 -0.8
181,949 - 13843 mRNA_5475 0.12 -1.6
181,950 + 13843 mRNA_5475 0.12 +0.7
182,096 + 13843 mRNA_5475 0.21 -0.3
182,107 + 13843 mRNA_5475 0.22 -0.2
182,247 + 13843 mRNA_5475 0.31 -0.6
182,252 - 13843 mRNA_5475 0.31 -0.5
182,419 + 13843 mRNA_5475 0.41 -1.0
182,567 - 13843 mRNA_5475 0.51 -0.6

Or see this region's nucleotide sequence