Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5528

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13895 and 13896 are separated by 279 nucleotides13896 and 13897 are separated by 244 nucleotides mRNA_5527: 13895 - K11883 NOB1 RNA-binding protein NOB1, at 303,697 to 305,493 13895 mRNA_5528: 13896 - HMMPfam-Protein of unknown function (DUF2416)-PF10315, at 305,773 to 306,425 13896 mRNA_5529: 13897 - K18045 SIW14, OCA3 tyrosine-protein phosphatase SIW14, at 306,670 to 307,631 13897

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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305,508 - +0.6
305,542 - +1.0
305,722 - +0.0
305,837 - -1.1
306,006 - 13896 mRNA_5528 0.36 -0.5
306,125 - 13896 mRNA_5528 0.54 +1.3
306,134 - 13896 mRNA_5528 0.55 -0.1
306,170 + 13896 mRNA_5528 0.61 +0.2
306,292 - 13896 mRNA_5528 0.79 -0.4
306,315 + 13896 mRNA_5528 0.83 -0.4
306,341 - 13896 mRNA_5528 0.87 -0.4
306,432 - +0.2
306,440 + -0.3
306,446 - +0.6
306,452 - +0.4
306,761 + -1.6
306,863 + 13897 mRNA_5529 0.20 -0.7
307,175 + 13897 mRNA_5529 0.52 -0.9
307,183 + 13897 mRNA_5529 0.53 -0.8
307,354 - 13897 mRNA_5529 0.71 -0.4

Or see this region's nucleotide sequence