Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5569

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13936 and 13937 are separated by 503 nucleotides13937 and 13938 are separated by 559 nucleotides mRNA_5568: 13936 - Hypothetical Protein, at 396,764 to 397,075 13936 mRNA_5569: 13937 - BLAST pria protein [Moniliophthora roreri MCA 2997], at 397,579 to 399,010 13937 mRNA_5570: 13938 - K06067 HDAC1_2 histone deacetylase 1/2, at 399,570 to 402,274 13938

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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396,619 - -0.3
396,781 + +0.4
396,782 + -0.9
396,927 - 13936 mRNA_5568 0.52 +2.0
397,169 - +0.4
397,209 + -0.7
397,220 - +0.5
397,324 - -1.3
397,343 - +0.2
397,346 + -0.5
397,347 + -0.5
397,371 - -0.0
397,465 + -0.2
397,480 - +1.5
397,487 + +0.7
397,496 + -0.2
397,507 - -0.4
397,508 - -0.3
397,510 + -1.0
397,514 - +0.4
397,514 - -2.2
397,524 - -0.0
397,526 - -0.2
397,531 - -0.3
397,533 - +0.7
397,533 - -0.4
397,654 + +1.9
397,659 - -1.3
397,661 - -0.4
397,667 - -0.5
397,669 + +0.8
397,670 + +0.0
397,734 + 13937 mRNA_5569 0.11 +0.5
397,786 + 13937 mRNA_5569 0.14 -0.4
397,802 - 13937 mRNA_5569 0.16 +0.4
397,813 + 13937 mRNA_5569 0.16 -0.1
397,814 - 13937 mRNA_5569 0.16 +0.7
397,815 - 13937 mRNA_5569 0.16 +0.3
397,815 - 13937 mRNA_5569 0.16 -0.3
397,837 - 13937 mRNA_5569 0.18 -0.8
397,837 + 13937 mRNA_5569 0.18 +1.0
397,855 - 13937 mRNA_5569 0.19 +0.3
397,882 - 13937 mRNA_5569 0.21 -1.4
397,979 + 13937 mRNA_5569 0.28 +0.6
398,260 - 13937 mRNA_5569 0.48 +0.5
398,269 + 13937 mRNA_5569 0.48 +0.7
398,542 - 13937 mRNA_5569 0.67 +1.8
398,705 - 13937 mRNA_5569 0.79 +0.8
398,859 - 13937 mRNA_5569 0.89 -0.3
398,872 - +0.3
398,925 + -0.3
399,269 - +0.1
399,278 - +0.5
399,294 + +0.2
399,294 + -0.6
399,338 + -0.3
399,421 - -0.0
399,425 - -0.4
399,432 - -0.1
399,437 - -0.4
399,446 + -0.0
399,457 - +1.0
399,464 - -0.7

Or see this region's nucleotide sequence