Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5589

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13957 and 13958 are separated by 116 nucleotides mRNA_5589: 13957 - HMMPfam-Region in Clathrin and VPS-PF00637,ProSiteProfiles-Clathrin heavy-chain (CHCR) repeat profile.-PS50236,SMART-Clathrin heavy chain repeat homology-SM00299,SUPERFAMILY--SSF48371, at 452,647 to 453,380 13957 mRNA_5590: 13958 - K11137 TELO2, TEL2 telomere length regulation protein, at 453,497 to 457,057 13958

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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451,810 + +1.7
451,819 - -0.4
451,822 - +1.9
451,976 + +0.2
451,982 - -1.0
452,008 - -0.2
452,118 - +1.4
452,157 + -0.3
452,276 - -0.4
452,276 + -0.8
452,423 - +0.4
452,540 - -0.5
452,596 - +2.3
453,000 + 13957 mRNA_5589 0.48 +0.6
453,034 + 13957 mRNA_5589 0.53 +0.1

Or see this region's nucleotide sequence