Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5732

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14099 and 14100 are separated by 486 nucleotides14100 and 14101 overlap by 62 nucleotides mRNA_5731: 14099 - Hypothetical Protein, at 797,618 to 798,076 14099 mRNA_5732: 14100 - HMMPfam-bZIP transcription factor-PF00170,HMMPfam-Minimal binding motif of Hap4 for binding to Hap2/3/5-PF10297,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,SUPERFAMILY--SSF57959, at 798,563 to 800,717 14100 mRNA_5733: 14101 - KOG4197 FOG PPR repeat, at 800,656 to 803,521 14101

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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797,578 - -0.5
797,583 + +0.7
797,718 - 14099 mRNA_5731 0.22 -1.0
797,721 + 14099 mRNA_5731 0.22 +0.4
797,727 + 14099 mRNA_5731 0.24 -0.1
797,740 - 14099 mRNA_5731 0.27 +0.3
797,747 + 14099 mRNA_5731 0.28 +1.7
797,757 + 14099 mRNA_5731 0.30 -0.3
797,991 - 14099 mRNA_5731 0.81 -0.6
798,449 + +1.7
798,468 + +1.4
798,470 + +0.5
798,480 + +0.1
798,649 + -0.3
798,935 + 14100 mRNA_5732 0.17 +0.2
799,207 - 14100 mRNA_5732 0.30 -0.7
799,380 - 14100 mRNA_5732 0.38 -0.2
799,467 - 14100 mRNA_5732 0.42 -1.8
799,610 + 14100 mRNA_5732 0.49 -1.2
799,769 + 14100 mRNA_5732 0.56 +1.1
800,037 - 14100 mRNA_5732 0.68 -0.3
800,229 - 14100 mRNA_5732 0.77 -0.1
800,358 + 14100 mRNA_5732 0.83 +0.2
800,946 - 14101 mRNA_5733 0.10 -0.3

Or see this region's nucleotide sequence